STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rnf44RING-type domain-containing protein. (121 aa)    
Predicted Functional Partners:
ENSCMIP00000003473
Uncharacterized protein.
 
      0.873
uba52
Ribosomal protein L40-like isoform 1.
    
 0.758
Ubc
Ubiquitin-like domain-containing protein.
    
 0.710
rps27a
Ubiquitin-like domain-containing protein.
    
 0.684
nap1l1
Nucleosome assembly protein 1-like 1; Belongs to the nucleosome assembly protein (NAP) family.
   
  
 0.584
ube2k
Uncharacterized protein; Belongs to the ubiquitin-conjugating enzyme family.
    
 0.544
ubxn7
UBX domain-containing protein 7.
   
 
 0.518
pin4
Peptidyl-prolyl cis-trans isomerase.
    
 
 0.502
Smad6
MH2 domain-containing protein.
   
 0.499
smad7
Mothers against decapentaplegic homolog.
   
 0.499
Your Current Organism:
Callorhinchus milii
NCBI taxonomy Id: 7868
Other names: Australian ghost shark, C. milii, elephant fish, elephant shark, ghost shark, makorepe, plownose chimaera, reperepe
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