Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ENSCMIP00000003490Uncharacterized protein. (72 aa)    
Predicted Functional Partners:
dhx38
Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16-like protein.
   
 0.882
cwc22
MI domain-containing protein.
   
 0.869
cdc40
WD_REPEATS_REGION domain-containing protein.
   
  0.817
bud31
Uncharacterized protein.
   
 
 0.801
ppwd1
Peptidylprolyl isomerase domain and WD repeat-containing protein 1.
   
  0.794
syf2
Uncharacterized protein.
    
  0.741
yju2
Coiled-coil domain-containing protein 94.
    
  0.741
dhx35
Uncharacterized protein.
   
 0.712
prpf8
MPN domain-containing protein.
    
 
 0.703
crnkl1
Uncharacterized protein.
   
 
 0.699
Your Current Organism:
Callorhinchus milii
NCBI taxonomy Id: 7868
Other names: Australian ghost shark, C. milii, elephant fish, elephant shark, ghost shark, makorepe, plownose chimaera, reperepe
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