LOC103191320 protein (Callorhinchus milii) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

LOC103191320

PHD domain-containing protein. (502 aa)

Predicted Functional Partners:

kansl2

0.956

mcrs1

0.949

ENSCMIP00000007969

0.948

kansl1

0.932

kansl1l

0.932

ENSCMIP00000002181

0.929

kansl3

0.892

gatad2a

0.804

kat8

0.793

LOC103173161

0.793

Your Current Organism:

Callorhinchus milii

NCBI taxonomy Id: 7868
Other names: Australian ghost shark, C. milii, elephant fish, elephant shark, ghost shark, makorepe, plownose chimaera, reperepe

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSCMIP00000002181	ENSCMIP00000007969	ENSCMIP00000002181	ENSCMIP00000007969	Uncharacterized protein.	Uncharacterized protein.	0.948
ENSCMIP00000002181	LOC103173161	ENSCMIP00000002181	ENSCMIP00000009052	Uncharacterized protein.	Histone acetyltransferase; Belongs to the MYST (SAS/MOZ) family.	0.793
ENSCMIP00000002181	LOC103191320	ENSCMIP00000002181	ENSCMIP00000003496	Uncharacterized protein.	PHD domain-containing protein.	0.929
ENSCMIP00000002181	gatad2a	ENSCMIP00000002181	ENSCMIP00000009756	Uncharacterized protein.	GATA-type domain-containing protein.	0.804
ENSCMIP00000002181	kansl1	ENSCMIP00000002181	ENSCMIP00000007587	Uncharacterized protein.	PEHE domain-containing protein.	0.932
ENSCMIP00000002181	kansl1l	ENSCMIP00000002181	ENSCMIP00000033231	Uncharacterized protein.	PEHE domain-containing protein.	0.932
ENSCMIP00000002181	kansl2	ENSCMIP00000002181	ENSCMIP00000024501	Uncharacterized protein.	Uncharacterized protein.	0.956
ENSCMIP00000002181	kansl3	ENSCMIP00000002181	ENSCMIP00000007974	Uncharacterized protein.	Uncharacterized protein.	0.892
ENSCMIP00000002181	kat8	ENSCMIP00000002181	ENSCMIP00000005507	Uncharacterized protein.	Histone acetyltransferase; Belongs to the MYST (SAS/MOZ) family.	0.793
ENSCMIP00000002181	mcrs1	ENSCMIP00000002181	ENSCMIP00000035114	Uncharacterized protein.	FHA domain-containing protein.	0.949
ENSCMIP00000007969	ENSCMIP00000002181	ENSCMIP00000007969	ENSCMIP00000002181	Uncharacterized protein.	Uncharacterized protein.	0.948
ENSCMIP00000007969	LOC103173161	ENSCMIP00000007969	ENSCMIP00000009052	Uncharacterized protein.	Histone acetyltransferase; Belongs to the MYST (SAS/MOZ) family.	0.847
ENSCMIP00000007969	LOC103191320	ENSCMIP00000007969	ENSCMIP00000003496	Uncharacterized protein.	PHD domain-containing protein.	0.948
ENSCMIP00000007969	kansl1	ENSCMIP00000007969	ENSCMIP00000007587	Uncharacterized protein.	PEHE domain-containing protein.	0.938
ENSCMIP00000007969	kansl1l	ENSCMIP00000007969	ENSCMIP00000033231	Uncharacterized protein.	PEHE domain-containing protein.	0.938
ENSCMIP00000007969	kansl2	ENSCMIP00000007969	ENSCMIP00000024501	Uncharacterized protein.	Uncharacterized protein.	0.990
ENSCMIP00000007969	kansl3	ENSCMIP00000007969	ENSCMIP00000007974	Uncharacterized protein.	Uncharacterized protein.	0.875
ENSCMIP00000007969	kat8	ENSCMIP00000007969	ENSCMIP00000005507	Uncharacterized protein.	Histone acetyltransferase; Belongs to the MYST (SAS/MOZ) family.	0.847
ENSCMIP00000007969	mcrs1	ENSCMIP00000007969	ENSCMIP00000035114	Uncharacterized protein.	FHA domain-containing protein.	0.985
LOC103173161	ENSCMIP00000002181	ENSCMIP00000009052	ENSCMIP00000002181	Histone acetyltransferase; Belongs to the MYST (SAS/MOZ) family.	Uncharacterized protein.	0.793