ENSCMIP00000003575 protein (Callorhinchus milii)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

ENSCMIP00000003575

Uncharacterized protein. (70 aa)

Predicted Functional Partners:

cdca8

0.998

incenp

0.990

ube2c

0.949

xiap

0.946

LOC103190377

0.942

aurka

0.942

dlgap5

0.937

casp9

0.902

atp5f1b

0.902

bub1

0.902

Your Current Organism:

Callorhinchus milii

NCBI taxonomy Id: 7868
Other names: Australian ghost shark, C. milii, elephant fish, elephant shark, ghost shark, makorepe, plownose chimaera, reperepe

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSCMIP00000003575	LOC103190377	ENSCMIP00000003575	ENSCMIP00000026116	Uncharacterized protein.	Aurora kinase B; Belongs to the protein kinase superfamily.	0.942
ENSCMIP00000003575	atp5f1b	ENSCMIP00000003575	ENSCMIP00000019000	Uncharacterized protein.	ATP synthase subunit beta; Produces ATP from ADP in the presence of a proton gradient across the membrane.	0.902
ENSCMIP00000003575	aurka	ENSCMIP00000003575	ENSCMIP00000032561	Uncharacterized protein.	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.	0.942
ENSCMIP00000003575	bub1	ENSCMIP00000003575	ENSCMIP00000034926	Uncharacterized protein.	Uncharacterized protein.	0.902
ENSCMIP00000003575	casp9	ENSCMIP00000003575	ENSCMIP00000016076	Uncharacterized protein.	Uncharacterized protein; Belongs to the peptidase C14A family.	0.902
ENSCMIP00000003575	cdca8	ENSCMIP00000003575	ENSCMIP00000046398	Uncharacterized protein.	Nbl1_Borealin_N domain-containing protein.	0.998
ENSCMIP00000003575	dlgap5	ENSCMIP00000003575	ENSCMIP00000014349	Uncharacterized protein.	Uncharacterized protein.	0.937
ENSCMIP00000003575	incenp	ENSCMIP00000003575	ENSCMIP00000026602	Uncharacterized protein.	Inner centromere protein.	0.990
ENSCMIP00000003575	ube2c	ENSCMIP00000003575	ENSCMIP00000036757	Uncharacterized protein.	UBIQUITIN_CONJUGAT_2 domain-containing protein; Belongs to the ubiquitin-conjugating enzyme family.	0.949
ENSCMIP00000003575	xiap	ENSCMIP00000003575	ENSCMIP00000036928	Uncharacterized protein.	RING-type domain-containing protein.	0.946
LOC103190377	ENSCMIP00000003575	ENSCMIP00000026116	ENSCMIP00000003575	Aurora kinase B; Belongs to the protein kinase superfamily.	Uncharacterized protein.	0.942
LOC103190377	atp5f1b	ENSCMIP00000026116	ENSCMIP00000019000	Aurora kinase B; Belongs to the protein kinase superfamily.	ATP synthase subunit beta; Produces ATP from ADP in the presence of a proton gradient across the membrane.	0.833
LOC103190377	bub1	ENSCMIP00000026116	ENSCMIP00000034926	Aurora kinase B; Belongs to the protein kinase superfamily.	Uncharacterized protein.	0.877
LOC103190377	cdca8	ENSCMIP00000026116	ENSCMIP00000046398	Aurora kinase B; Belongs to the protein kinase superfamily.	Nbl1_Borealin_N domain-containing protein.	0.971
LOC103190377	dlgap5	ENSCMIP00000026116	ENSCMIP00000014349	Aurora kinase B; Belongs to the protein kinase superfamily.	Uncharacterized protein.	0.800
LOC103190377	incenp	ENSCMIP00000026116	ENSCMIP00000026602	Aurora kinase B; Belongs to the protein kinase superfamily.	Inner centromere protein.	0.992
LOC103190377	ube2c	ENSCMIP00000026116	ENSCMIP00000036757	Aurora kinase B; Belongs to the protein kinase superfamily.	UBIQUITIN_CONJUGAT_2 domain-containing protein; Belongs to the ubiquitin-conjugating enzyme family.	0.827
LOC103190377	xiap	ENSCMIP00000026116	ENSCMIP00000036928	Aurora kinase B; Belongs to the protein kinase superfamily.	RING-type domain-containing protein.	0.756
atp5f1b	ENSCMIP00000003575	ENSCMIP00000019000	ENSCMIP00000003575	ATP synthase subunit beta; Produces ATP from ADP in the presence of a proton gradient across the membrane.	Uncharacterized protein.	0.902
atp5f1b	LOC103190377	ENSCMIP00000019000	ENSCMIP00000026116	ATP synthase subunit beta; Produces ATP from ADP in the presence of a proton gradient across the membrane.	Aurora kinase B; Belongs to the protein kinase superfamily.	0.833