Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ENSCMIP00000003597Tr-type G domain-containing protein. (60 aa)    
Predicted Functional Partners:
eef1g
Uncharacterized protein; Belongs to the GST superfamily.
   
 0.989
eef1b2
Uncharacterized protein; Belongs to the EF-1-beta/EF-1-delta family.
   
 0.924
fau
Ubiquitin-like domain-containing protein.
   
 0.901
eef1d
EF1_GNE domain-containing protein.
   
 0.893
ENSCMIP00000002712
tRNA-synt_1 domain-containing protein.
   
 0.887
rps3a
40S ribosomal protein S3a; Belongs to the eukaryotic ribosomal protein eS1 family.
   
 0.878
rpl12
Uncharacterized protein; Belongs to the universal ribosomal protein uL11 family.
   
 0.871
rps3
KH type-2 domain-containing protein; Belongs to the universal ribosomal protein uS3 family.
   
 0.866
rplp0
60S acidic ribosomal protein P0; Ribosomal protein P0 is the functional equivalent of E.coli protein L10.
   
 0.855
rps27a
Ubiquitin-like domain-containing protein.
   
 0.854
Your Current Organism:
Callorhinchus milii
NCBI taxonomy Id: 7868
Other names: Australian ghost shark, C. milii, elephant fish, elephant shark, ghost shark, makorepe, plownose chimaera, reperepe
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