LOC103182555 protein (Callorhinchus milii) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

LOC103182555

Hyaluronidase. (496 aa)

Predicted Functional Partners:

idua

0.930

gusb

0.925

arsb

0.913

itsn2

0.609

copb1

0.599

gbf1

0.597

arfgap3

0.593

copb2

0.592

arfgap1

0.591

ENSCMIP00000000308

0.565

Your Current Organism:

Callorhinchus milii

NCBI taxonomy Id: 7868
Other names: Australian ghost shark, C. milii, elephant fish, elephant shark, ghost shark, makorepe, plownose chimaera, reperepe

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSCMIP00000000308	LOC103182555	ENSCMIP00000000308	ENSCMIP00000003617	COPI_C domain-containing protein.	Hyaluronidase.	0.565
ENSCMIP00000000308	arfgap1	ENSCMIP00000000308	ENSCMIP00000028909	COPI_C domain-containing protein.	ADP-ribosylation factor GTPase-activating protein 1-like protein.	0.734
ENSCMIP00000000308	arfgap3	ENSCMIP00000000308	ENSCMIP00000048502	COPI_C domain-containing protein.	Arf-GAP domain-containing protein.	0.968
ENSCMIP00000000308	copb1	ENSCMIP00000000308	ENSCMIP00000034136	COPI_C domain-containing protein.	Coatomer subunit beta; The coatomer is a cytosolic protein complex that binds to dilysine motifs and reversibly associates with Golgi non-clathrin- coated vesicles, which further mediate biosynthetic protein transport from the ER, via the Golgi up to the trans Golgi network. Coatomer complex is required for budding from Golgi membranes, and is essential for the retrograde Golgi-to-ER transport of dilysine-tagged proteins.	0.999
ENSCMIP00000000308	copb2	ENSCMIP00000000308	ENSCMIP00000040668	COPI_C domain-containing protein.	Coatomer subunit beta; The coatomer is a cytosolic protein complex that binds to dilysine motifs and reversibly associates with Golgi non-clathrin- coated vesicles, which further mediate biosynthetic protein transport from the ER, via the Golgi up to the trans Golgi network. Coatomer complex is required for budding from Golgi membranes, and is essential for the retrograde Golgi-to-ER transport of dilysine-tagged proteins.	0.999
ENSCMIP00000000308	gbf1	ENSCMIP00000000308	ENSCMIP00000007377	COPI_C domain-containing protein.	SEC7 domain-containing protein.	0.864
LOC103182555	ENSCMIP00000000308	ENSCMIP00000003617	ENSCMIP00000000308	Hyaluronidase.	COPI_C domain-containing protein.	0.565
LOC103182555	arfgap1	ENSCMIP00000003617	ENSCMIP00000028909	Hyaluronidase.	ADP-ribosylation factor GTPase-activating protein 1-like protein.	0.591
LOC103182555	arfgap3	ENSCMIP00000003617	ENSCMIP00000048502	Hyaluronidase.	Arf-GAP domain-containing protein.	0.593
LOC103182555	arsb	ENSCMIP00000003617	ENSCMIP00000045006	Hyaluronidase.	Sulfatase domain-containing protein.	0.913
LOC103182555	copb1	ENSCMIP00000003617	ENSCMIP00000034136	Hyaluronidase.	Coatomer subunit beta; The coatomer is a cytosolic protein complex that binds to dilysine motifs and reversibly associates with Golgi non-clathrin- coated vesicles, which further mediate biosynthetic protein transport from the ER, via the Golgi up to the trans Golgi network. Coatomer complex is required for budding from Golgi membranes, and is essential for the retrograde Golgi-to-ER transport of dilysine-tagged proteins.	0.599
LOC103182555	copb2	ENSCMIP00000003617	ENSCMIP00000040668	Hyaluronidase.	Coatomer subunit beta; The coatomer is a cytosolic protein complex that binds to dilysine motifs and reversibly associates with Golgi non-clathrin- coated vesicles, which further mediate biosynthetic protein transport from the ER, via the Golgi up to the trans Golgi network. Coatomer complex is required for budding from Golgi membranes, and is essential for the retrograde Golgi-to-ER transport of dilysine-tagged proteins.	0.592
LOC103182555	gbf1	ENSCMIP00000003617	ENSCMIP00000007377	Hyaluronidase.	SEC7 domain-containing protein.	0.597
LOC103182555	gusb	ENSCMIP00000003617	ENSCMIP00000041783	Hyaluronidase.	Beta-glucuronidase; Plays an important role in the degradation of dermatan and keratan sulfates; Belongs to the glycosyl hydrolase 2 family.	0.925
LOC103182555	idua	ENSCMIP00000003617	ENSCMIP00000031437	Hyaluronidase.	Uncharacterized protein.	0.930
LOC103182555	itsn2	ENSCMIP00000003617	ENSCMIP00000024182	Hyaluronidase.	Uncharacterized protein.	0.609
arfgap1	ENSCMIP00000000308	ENSCMIP00000028909	ENSCMIP00000000308	ADP-ribosylation factor GTPase-activating protein 1-like protein.	COPI_C domain-containing protein.	0.734
arfgap1	LOC103182555	ENSCMIP00000028909	ENSCMIP00000003617	ADP-ribosylation factor GTPase-activating protein 1-like protein.	Hyaluronidase.	0.591
arfgap1	arfgap3	ENSCMIP00000028909	ENSCMIP00000048502	ADP-ribosylation factor GTPase-activating protein 1-like protein.	Arf-GAP domain-containing protein.	0.961
arfgap1	copb1	ENSCMIP00000028909	ENSCMIP00000034136	ADP-ribosylation factor GTPase-activating protein 1-like protein.	Coatomer subunit beta; The coatomer is a cytosolic protein complex that binds to dilysine motifs and reversibly associates with Golgi non-clathrin- coated vesicles, which further mediate biosynthetic protein transport from the ER, via the Golgi up to the trans Golgi network. Coatomer complex is required for budding from Golgi membranes, and is essential for the retrograde Golgi-to-ER transport of dilysine-tagged proteins.	0.744