Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
zc3h3Uncharacterized protein. (969 aa)    
Predicted Functional Partners:
ythdc1
YTH domain-containing protein.
     
 0.962
ythdc2
Uncharacterized protein.
     
 0.942
papolg
Uncharacterized protein.
    
 0.881
papola
Uncharacterized protein.
    
 0.881
cpsf1
Uncharacterized protein.
   
 0.866
cpsf3
Uncharacterized protein.
   
 0.859
sympk
Uncharacterized protein.
   
 0.858
cpsf2
Cleavage and polyadenylation specificity factor subunit 2.
   
 0.857
wdr82
WD repeat-containing protein 82.
   
 0.851
rbbp6
Uncharacterized protein.
   
 0.847
Your Current Organism:
Callorhinchus milii
NCBI taxonomy Id: 7868
Other names: Australian ghost shark, C. milii, elephant fish, elephant shark, ghost shark, makorepe, plownose chimaera, reperepe
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