prf1 protein (Callorhinchus milii) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

prf1

MACPF domain-containing protein. (215 aa)

Predicted Functional Partners:

LOC103181487

0.932

il2rb

0.887

ifng

0.804

cd247

0.759

LOC103180013

0.731

LOC103180014

0.731

ENSCMIP00000005062

0.722

LOC103189107

0.679

lamp1

0.660

stx11

0.614

Your Current Organism:

Callorhinchus milii

NCBI taxonomy Id: 7868
Other names: Australian ghost shark, C. milii, elephant fish, elephant shark, ghost shark, makorepe, plownose chimaera, reperepe

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSCMIP00000005062	cd247	ENSCMIP00000005062	ENSCMIP00000000733	Ig-like domain-containing protein.	Uncharacterized protein.	0.689
ENSCMIP00000005062	ifng	ENSCMIP00000005062	ENSCMIP00000024377	Ig-like domain-containing protein.	Uncharacterized protein.	0.627
ENSCMIP00000005062	lamp1	ENSCMIP00000005062	ENSCMIP00000026020	Ig-like domain-containing protein.	Lysosome-associated membrane glycoprotein 1-like protein.	0.432
ENSCMIP00000005062	prf1	ENSCMIP00000005062	ENSCMIP00000003682	Ig-like domain-containing protein.	MACPF domain-containing protein.	0.722
LOC103180013	LOC103180014	ENSCMIP00000044878	ENSCMIP00000044881	Tumor necrosis factor ligand superfamily member 6-like protein; Belongs to the tumor necrosis factor family.	TNF_2 domain-containing protein; Belongs to the tumor necrosis factor family.	0.904
LOC103180013	LOC103181487	ENSCMIP00000044878	ENSCMIP00000027209	Tumor necrosis factor ligand superfamily member 6-like protein; Belongs to the tumor necrosis factor family.	Ig-like domain-containing protein.	0.644
LOC103180013	LOC103189107	ENSCMIP00000044878	ENSCMIP00000047288	Tumor necrosis factor ligand superfamily member 6-like protein; Belongs to the tumor necrosis factor family.	Uncharacterized protein.	0.461
LOC103180013	ifng	ENSCMIP00000044878	ENSCMIP00000024377	Tumor necrosis factor ligand superfamily member 6-like protein; Belongs to the tumor necrosis factor family.	Uncharacterized protein.	0.680
LOC103180013	il2rb	ENSCMIP00000044878	ENSCMIP00000014241	Tumor necrosis factor ligand superfamily member 6-like protein; Belongs to the tumor necrosis factor family.	Fibronectin type-III domain-containing protein.	0.431
LOC103180013	prf1	ENSCMIP00000044878	ENSCMIP00000003682	Tumor necrosis factor ligand superfamily member 6-like protein; Belongs to the tumor necrosis factor family.	MACPF domain-containing protein.	0.731
LOC103180014	LOC103180013	ENSCMIP00000044881	ENSCMIP00000044878	TNF_2 domain-containing protein; Belongs to the tumor necrosis factor family.	Tumor necrosis factor ligand superfamily member 6-like protein; Belongs to the tumor necrosis factor family.	0.904
LOC103180014	LOC103181487	ENSCMIP00000044881	ENSCMIP00000027209	TNF_2 domain-containing protein; Belongs to the tumor necrosis factor family.	Ig-like domain-containing protein.	0.644
LOC103180014	LOC103189107	ENSCMIP00000044881	ENSCMIP00000047288	TNF_2 domain-containing protein; Belongs to the tumor necrosis factor family.	Uncharacterized protein.	0.461
LOC103180014	ifng	ENSCMIP00000044881	ENSCMIP00000024377	TNF_2 domain-containing protein; Belongs to the tumor necrosis factor family.	Uncharacterized protein.	0.680
LOC103180014	il2rb	ENSCMIP00000044881	ENSCMIP00000014241	TNF_2 domain-containing protein; Belongs to the tumor necrosis factor family.	Fibronectin type-III domain-containing protein.	0.431
LOC103180014	prf1	ENSCMIP00000044881	ENSCMIP00000003682	TNF_2 domain-containing protein; Belongs to the tumor necrosis factor family.	MACPF domain-containing protein.	0.731
LOC103181487	LOC103180013	ENSCMIP00000027209	ENSCMIP00000044878	Ig-like domain-containing protein.	Tumor necrosis factor ligand superfamily member 6-like protein; Belongs to the tumor necrosis factor family.	0.644
LOC103181487	LOC103180014	ENSCMIP00000027209	ENSCMIP00000044881	Ig-like domain-containing protein.	TNF_2 domain-containing protein; Belongs to the tumor necrosis factor family.	0.644
LOC103181487	LOC103189107	ENSCMIP00000027209	ENSCMIP00000047288	Ig-like domain-containing protein.	Uncharacterized protein.	0.773
LOC103181487	cd247	ENSCMIP00000027209	ENSCMIP00000000733	Ig-like domain-containing protein.	Uncharacterized protein.	0.977