STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ppp1r16aANK_REP_REGION domain-containing protein. (500 aa)    
Predicted Functional Partners:
ppp1cb
Serine/threonine-protein phosphatase; Belongs to the PPP phosphatase family.
   
 0.682
ENSCMIP00000003828
Aminotran_1_2 domain-containing protein.
 
 
    0.658
ppp1cc
Serine/threonine-protein phosphatase; Belongs to the PPP phosphatase family.
   
 0.653
LOC103189948
Uncharacterized protein.
   
 0.653
LOC103184764
Uncharacterized protein.
  
  0.525
asb5
Ankyrin repeat and SOCS box protein 5-like protein.
  
     0.497
ankrd1
ANK_REP_REGION domain-containing protein.
  
     0.497
LOC103183945
Uncharacterized protein.
  
     0.494
ENSCMIP00000000239
ANK_REP_REGION domain-containing protein.
  
     0.489
LOC103184775
Uncharacterized protein.
  
     0.487
Your Current Organism:
Callorhinchus milii
NCBI taxonomy Id: 7868
Other names: Australian ghost shark, C. milii, elephant fish, elephant shark, ghost shark, makorepe, plownose chimaera, reperepe
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