STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSCMIP00000003831Histone H4; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling. (94 aa)    
Predicted Functional Partners:
LOC103173215
Histone H3; Belongs to the histone H3 family.
 
 
 0.877
ENSCMIP00000011641
Histone H3; Belongs to the histone H3 family.
 
 
 0.869
ENSCMIP00000004257
Histone H2B; Belongs to the histone H2B family.
 
 
 0.848
LOC103187764
Histone H2A; Belongs to the histone H2A family.
   
 0.846
leo1
RNA polymerase-associated protein LEO1.
    
 
 0.835
hat1
Histone acetyltransferase type B catalytic subunit; Acetylates soluble but not nucleosomal histone H4 at 'Lys-5' (H4K5ac) and 'Lys-12' (H4K12ac) and, to a lesser extent, acetylates histone H2A at 'Lys-5' (H2AK5ac). Has intrinsic substrate specificity that modifies lysine in recognition sequence GXGKXG.
    
 0.834
ENSCMIP00000039901
Histone domain-containing protein; Belongs to the histone H2B family.
 
 
 0.825
LOC103181459
H2A histone family, member Y2; Belongs to the histone H2A family.
 
 
 0.824
LOC103183694
Core histone macro-H2A; Variant histone H2A which replaces conventional H2A in a subset of nucleosomes.
 
 
 0.824
arid4a
ARID domain-containing protein.
    
 0.814
Your Current Organism:
Callorhinchus milii
NCBI taxonomy Id: 7868
Other names: Australian ghost shark, C. milii, elephant fish, elephant shark, ghost shark, makorepe, plownose chimaera, reperepe
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.