STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSCMIP00000003910IF rod domain-containing protein; Belongs to the intermediate filament family. (147 aa)    
Predicted Functional Partners:
bag3
BAG family molecular chaperone regulator 3.
    
 0.588
keratin
IF rod domain-containing protein; Belongs to the intermediate filament family.
  
 0.543
rps27a
Ubiquitin-like domain-containing protein.
    
  0.517
uba52
Ribosomal protein L40-like isoform 1.
   
  0.497
LOC103187541
Type I keratin K18; Belongs to the intermediate filament family.
  
 0.489
hsp90b1
Endoplasmin-like protein.
    
 0.469
LOC103181932
Uncharacterized protein.
  
     0.462
ENSCMIP00000001384
Uncharacterized protein.
  
 
 0.460
bag2
BAG domain-containing protein.
    
 
 0.459
birc6
UBIQUITIN_CONJUGAT_2 domain-containing protein.
   
 0.455
Your Current Organism:
Callorhinchus milii
NCBI taxonomy Id: 7868
Other names: Australian ghost shark, C. milii, elephant fish, elephant shark, ghost shark, makorepe, plownose chimaera, reperepe
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.