pax9 protein (Callorhinchus milii) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

pax9

Paired box protein Pax-9. (334 aa)

Predicted Functional Partners:

meox2

0.715

hand2

0.613

gcm2

0.605

alx4

0.601

msx1

0.576

dlx2

0.551

hoxa3

0.532

ENSCMIP00000009087

0.506

aatf

0.500

Tshz3

0.500

Your Current Organism:

Callorhinchus milii

NCBI taxonomy Id: 7868
Other names: Australian ghost shark, C. milii, elephant fish, elephant shark, ghost shark, makorepe, plownose chimaera, reperepe

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSCMIP00000009087	pax9	ENSCMIP00000009087	ENSCMIP00000003911	Homeobox domain-containing protein.	Paired box protein Pax-9.	0.506
Tshz3	pax9	ENSCMIP00000037473	ENSCMIP00000003911	Uncharacterized protein.	Paired box protein Pax-9.	0.500
aatf	pax9	ENSCMIP00000033041	ENSCMIP00000003911	Uncharacterized protein.	Paired box protein Pax-9.	0.500
alx4	hand2	ENSCMIP00000039145	ENSCMIP00000006607	Uncharacterized protein.	BHLH domain-containing protein.	0.621
alx4	pax9	ENSCMIP00000039145	ENSCMIP00000003911	Uncharacterized protein.	Paired box protein Pax-9.	0.601
dlx2	hand2	ENSCMIP00000027424	ENSCMIP00000006607	Homeobox domain-containing protein.	BHLH domain-containing protein.	0.601
dlx2	pax9	ENSCMIP00000027424	ENSCMIP00000003911	Homeobox domain-containing protein.	Paired box protein Pax-9.	0.551
gcm2	pax9	ENSCMIP00000034316	ENSCMIP00000003911	GCM domain-containing protein.	Paired box protein Pax-9.	0.605
hand2	alx4	ENSCMIP00000006607	ENSCMIP00000039145	BHLH domain-containing protein.	Uncharacterized protein.	0.621
hand2	dlx2	ENSCMIP00000006607	ENSCMIP00000027424	BHLH domain-containing protein.	Homeobox domain-containing protein.	0.601
hand2	msx1	ENSCMIP00000006607	ENSCMIP00000040495	BHLH domain-containing protein.	Homeobox domain-containing protein.	0.438
hand2	pax9	ENSCMIP00000006607	ENSCMIP00000003911	BHLH domain-containing protein.	Paired box protein Pax-9.	0.613
hoxa3	pax9	ENSCMIP00000013664	ENSCMIP00000003911	Homeobox protein HoxA3.	Paired box protein Pax-9.	0.532
meox2	pax9	ENSCMIP00000014321	ENSCMIP00000003911	Homeobox domain-containing protein.	Paired box protein Pax-9.	0.715
msx1	hand2	ENSCMIP00000040495	ENSCMIP00000006607	Homeobox domain-containing protein.	BHLH domain-containing protein.	0.438
msx1	pax9	ENSCMIP00000040495	ENSCMIP00000003911	Homeobox domain-containing protein.	Paired box protein Pax-9.	0.576
pax9	ENSCMIP00000009087	ENSCMIP00000003911	ENSCMIP00000009087	Paired box protein Pax-9.	Homeobox domain-containing protein.	0.506
pax9	Tshz3	ENSCMIP00000003911	ENSCMIP00000037473	Paired box protein Pax-9.	Uncharacterized protein.	0.500
pax9	aatf	ENSCMIP00000003911	ENSCMIP00000033041	Paired box protein Pax-9.	Uncharacterized protein.	0.500
pax9	alx4	ENSCMIP00000003911	ENSCMIP00000039145	Paired box protein Pax-9.	Uncharacterized protein.	0.601