p3h1 protein (Callorhinchus milii) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

p3h1

Fe2OG dioxygenase domain-containing protein. (777 aa)

Predicted Functional Partners:

crtap

0.772

LOC103190063

0.772

ppib

0.767

ppic

0.628

wdr19

0.555

omd

0.502

aspn

0.500

slc26a5

0.483

cep290

0.473

LOC103173897

0.460

Your Current Organism:

Callorhinchus milii

NCBI taxonomy Id: 7868
Other names: Australian ghost shark, C. milii, elephant fish, elephant shark, ghost shark, makorepe, plownose chimaera, reperepe

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC103173897	LOC103190063	ENSCMIP00000005087	ENSCMIP00000040113	SERPIN domain-containing protein; Belongs to the serpin family.	Uncharacterized protein.	0.583
LOC103173897	crtap	ENSCMIP00000005087	ENSCMIP00000035474	SERPIN domain-containing protein; Belongs to the serpin family.	Cartilage-associated protein-like protein.	0.583
LOC103173897	p3h1	ENSCMIP00000005087	ENSCMIP00000003934	SERPIN domain-containing protein; Belongs to the serpin family.	Fe2OG dioxygenase domain-containing protein.	0.460
LOC103173897	ppib	ENSCMIP00000005087	ENSCMIP00000022902	SERPIN domain-containing protein; Belongs to the serpin family.	Peptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family.	0.633
LOC103173897	ppic	ENSCMIP00000005087	ENSCMIP00000027932	SERPIN domain-containing protein; Belongs to the serpin family.	Peptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family.	0.778
LOC103190063	LOC103173897	ENSCMIP00000040113	ENSCMIP00000005087	Uncharacterized protein.	SERPIN domain-containing protein; Belongs to the serpin family.	0.583
LOC103190063	cep290	ENSCMIP00000040113	ENSCMIP00000022804	Uncharacterized protein.	CEP209_CC5 domain-containing protein.	0.672
LOC103190063	p3h1	ENSCMIP00000040113	ENSCMIP00000003934	Uncharacterized protein.	Fe2OG dioxygenase domain-containing protein.	0.772
LOC103190063	ppib	ENSCMIP00000040113	ENSCMIP00000022902	Uncharacterized protein.	Peptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family.	0.950
LOC103190063	ppic	ENSCMIP00000040113	ENSCMIP00000027932	Uncharacterized protein.	Peptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family.	0.826
LOC103190063	wdr19	ENSCMIP00000040113	ENSCMIP00000026994	Uncharacterized protein.	WD_REPEATS_REGION domain-containing protein.	0.675
aspn	p3h1	ENSCMIP00000018912	ENSCMIP00000003934	Asporin.	Fe2OG dioxygenase domain-containing protein.	0.500
aspn	ppic	ENSCMIP00000018912	ENSCMIP00000027932	Asporin.	Peptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family.	0.416
cep290	LOC103190063	ENSCMIP00000022804	ENSCMIP00000040113	CEP209_CC5 domain-containing protein.	Uncharacterized protein.	0.672
cep290	crtap	ENSCMIP00000022804	ENSCMIP00000035474	CEP209_CC5 domain-containing protein.	Cartilage-associated protein-like protein.	0.672
cep290	p3h1	ENSCMIP00000022804	ENSCMIP00000003934	CEP209_CC5 domain-containing protein.	Fe2OG dioxygenase domain-containing protein.	0.473
cep290	ppib	ENSCMIP00000022804	ENSCMIP00000022902	CEP209_CC5 domain-containing protein.	Peptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family.	0.884
cep290	ppic	ENSCMIP00000022804	ENSCMIP00000027932	CEP209_CC5 domain-containing protein.	Peptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family.	0.573
cep290	wdr19	ENSCMIP00000022804	ENSCMIP00000026994	CEP209_CC5 domain-containing protein.	WD_REPEATS_REGION domain-containing protein.	0.920
crtap	LOC103173897	ENSCMIP00000035474	ENSCMIP00000005087	Cartilage-associated protein-like protein.	SERPIN domain-containing protein; Belongs to the serpin family.	0.583