cpe protein (Callorhinchus milii) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

cpe

Uncharacterized protein. (439 aa)

Predicted Functional Partners:

ins

0.738

pcsk2

0.697

spcs2

0.671

myom2

0.663

pam

0.631

scg3

0.611

ENSCMIP00000035562

0.607

cck

0.600

cpa6

0.596

LOC103184479

0.596

Your Current Organism:

Callorhinchus milii

NCBI taxonomy Id: 7868
Other names: Australian ghost shark, C. milii, elephant fish, elephant shark, ghost shark, makorepe, plownose chimaera, reperepe

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSCMIP00000035562	cck	ENSCMIP00000035562	ENSCMIP00000012014	Uncharacterized protein.	Gastrin domain-containing protein.	0.740
ENSCMIP00000035562	cpe	ENSCMIP00000035562	ENSCMIP00000003977	Uncharacterized protein.	Uncharacterized protein.	0.607
ENSCMIP00000035562	ins	ENSCMIP00000035562	ENSCMIP00000017634	Uncharacterized protein.	Insulin A chain; Insulin decreases blood glucose concentration. It increases cell permeability to monosaccharides, amino acids and fatty acids. It accelerates glycolysis, the pentose phosphate cycle, and glycogen synthesis in liver.	0.772
ENSCMIP00000035562	pcsk2	ENSCMIP00000035562	ENSCMIP00000049063	Uncharacterized protein.	Neuroendocrine convertase 2; Belongs to the peptidase S8 family.	0.510
LOC103184479	cpe	ENSCMIP00000024098	ENSCMIP00000003977	Uncharacterized protein.	Uncharacterized protein.	0.596
cck	ENSCMIP00000035562	ENSCMIP00000012014	ENSCMIP00000035562	Gastrin domain-containing protein.	Uncharacterized protein.	0.740
cck	cpe	ENSCMIP00000012014	ENSCMIP00000003977	Gastrin domain-containing protein.	Uncharacterized protein.	0.600
cck	ins	ENSCMIP00000012014	ENSCMIP00000017634	Gastrin domain-containing protein.	Insulin A chain; Insulin decreases blood glucose concentration. It increases cell permeability to monosaccharides, amino acids and fatty acids. It accelerates glycolysis, the pentose phosphate cycle, and glycogen synthesis in liver.	0.753
cck	scg3	ENSCMIP00000012014	ENSCMIP00000047122	Gastrin domain-containing protein.	Uncharacterized protein.	0.405
cpa6	cpe	ENSCMIP00000001861	ENSCMIP00000003977	Peptidase_M14 domain-containing protein.	Uncharacterized protein.	0.596
cpe	ENSCMIP00000035562	ENSCMIP00000003977	ENSCMIP00000035562	Uncharacterized protein.	Uncharacterized protein.	0.607
cpe	LOC103184479	ENSCMIP00000003977	ENSCMIP00000024098	Uncharacterized protein.	Uncharacterized protein.	0.596
cpe	cck	ENSCMIP00000003977	ENSCMIP00000012014	Uncharacterized protein.	Gastrin domain-containing protein.	0.600
cpe	cpa6	ENSCMIP00000003977	ENSCMIP00000001861	Uncharacterized protein.	Peptidase_M14 domain-containing protein.	0.596
cpe	ins	ENSCMIP00000003977	ENSCMIP00000017634	Uncharacterized protein.	Insulin A chain; Insulin decreases blood glucose concentration. It increases cell permeability to monosaccharides, amino acids and fatty acids. It accelerates glycolysis, the pentose phosphate cycle, and glycogen synthesis in liver.	0.738
cpe	myom2	ENSCMIP00000003977	ENSCMIP00000038916	Uncharacterized protein.	Uncharacterized protein.	0.663
cpe	pam	ENSCMIP00000003977	ENSCMIP00000043088	Uncharacterized protein.	Peptidyl-glycine alpha-amidating monooxygenase.	0.631
cpe	pcsk2	ENSCMIP00000003977	ENSCMIP00000049063	Uncharacterized protein.	Neuroendocrine convertase 2; Belongs to the peptidase S8 family.	0.697
cpe	scg3	ENSCMIP00000003977	ENSCMIP00000047122	Uncharacterized protein.	Uncharacterized protein.	0.611
cpe	spcs2	ENSCMIP00000003977	ENSCMIP00000002557	Uncharacterized protein.	Uncharacterized protein.	0.671