ints5 protein (Callorhinchus milii) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

ints5

Uncharacterized protein. (893 aa)

Predicted Functional Partners:

ints8

0.999

ints11

0.999

ints12

0.999

ints1

0.999

ints7

0.999

ints13

0.999

ints9

0.999

ints2

0.999

ints14

0.999

ints4

0.994

Your Current Organism:

Callorhinchus milii

NCBI taxonomy Id: 7868
Other names: Australian ghost shark, C. milii, elephant fish, elephant shark, ghost shark, makorepe, plownose chimaera, reperepe

Export your current network:

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same PNG format, but at higher resolution

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SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

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TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ints1	ints11	ENSCMIP00000026150	ENSCMIP00000006873	DUF3677 domain-containing protein.	Uncharacterized protein.	0.999
ints1	ints12	ENSCMIP00000026150	ENSCMIP00000017019	DUF3677 domain-containing protein.	PHD-type domain-containing protein.	0.999
ints1	ints13	ENSCMIP00000026150	ENSCMIP00000028151	DUF3677 domain-containing protein.	Cell cycle regulator Mat89Bb-like protein.	0.999
ints1	ints14	ENSCMIP00000026150	ENSCMIP00000045281	DUF3677 domain-containing protein.	VWFA domain-containing protein.	0.999
ints1	ints2	ENSCMIP00000026150	ENSCMIP00000040089	DUF3677 domain-containing protein.	Integrator complex subunit 2.	0.999
ints1	ints4	ENSCMIP00000026150	ENSCMIP00000011140	DUF3677 domain-containing protein.	Uncharacterized protein.	0.994
ints1	ints5	ENSCMIP00000026150	ENSCMIP00000004113	DUF3677 domain-containing protein.	Uncharacterized protein.	0.999
ints1	ints7	ENSCMIP00000026150	ENSCMIP00000026596	DUF3677 domain-containing protein.	Uncharacterized protein.	0.999
ints1	ints8	ENSCMIP00000026150	ENSCMIP00000006661	DUF3677 domain-containing protein.	Integrator complex subunit 8.	0.999
ints1	ints9	ENSCMIP00000026150	ENSCMIP00000030738	DUF3677 domain-containing protein.	Beta-Casp domain-containing protein.	0.999
ints11	ints1	ENSCMIP00000006873	ENSCMIP00000026150	Uncharacterized protein.	DUF3677 domain-containing protein.	0.999
ints11	ints12	ENSCMIP00000006873	ENSCMIP00000017019	Uncharacterized protein.	PHD-type domain-containing protein.	0.997
ints11	ints13	ENSCMIP00000006873	ENSCMIP00000028151	Uncharacterized protein.	Cell cycle regulator Mat89Bb-like protein.	0.998
ints11	ints14	ENSCMIP00000006873	ENSCMIP00000045281	Uncharacterized protein.	VWFA domain-containing protein.	0.997
ints11	ints2	ENSCMIP00000006873	ENSCMIP00000040089	Uncharacterized protein.	Integrator complex subunit 2.	0.993
ints11	ints4	ENSCMIP00000006873	ENSCMIP00000011140	Uncharacterized protein.	Uncharacterized protein.	0.989
ints11	ints5	ENSCMIP00000006873	ENSCMIP00000004113	Uncharacterized protein.	Uncharacterized protein.	0.999
ints11	ints7	ENSCMIP00000006873	ENSCMIP00000026596	Uncharacterized protein.	Uncharacterized protein.	0.998
ints11	ints8	ENSCMIP00000006873	ENSCMIP00000006661	Uncharacterized protein.	Integrator complex subunit 8.	0.994
ints11	ints9	ENSCMIP00000006873	ENSCMIP00000030738	Uncharacterized protein.	Beta-Casp domain-containing protein.	0.999