pyroxd1 protein (Callorhinchus milii) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

pyroxd1

Uncharacterized protein. (405 aa)

Predicted Functional Partners:

uprt

0.962

rtcb

0.868

mrps35

0.716

recql

0.693

suox

0.651

Mchr1

0.633

ENSCMIP00000001060

0.632

fdxr

0.632

Gfod1

0.590

gfod2

0.590

Your Current Organism:

Callorhinchus milii

NCBI taxonomy Id: 7868
Other names: Australian ghost shark, C. milii, elephant fish, elephant shark, ghost shark, makorepe, plownose chimaera, reperepe

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSCMIP00000001060	pyroxd1	ENSCMIP00000001060	ENSCMIP00000004141	Uncharacterized protein.	Uncharacterized protein.	0.632
Gfod1	pyroxd1	ENSCMIP00000016609	ENSCMIP00000004141	Uncharacterized protein.	Uncharacterized protein.	0.590
Mchr1	pyroxd1	ENSCMIP00000009760	ENSCMIP00000004141	G_PROTEIN_RECEP_F1_2 domain-containing protein.	Uncharacterized protein.	0.633
fdxr	pyroxd1	ENSCMIP00000006190	ENSCMIP00000004141	NADPH:adrenodoxin oxidoreductase, mitochondrial.	Uncharacterized protein.	0.632
gfod2	pyroxd1	ENSCMIP00000046067	ENSCMIP00000004141	GFO_IDH_MocA domain-containing protein.	Uncharacterized protein.	0.590
mrps35	pyroxd1	ENSCMIP00000020735	ENSCMIP00000004141	MRP-S28 domain-containing protein.	Uncharacterized protein.	0.716
pyroxd1	ENSCMIP00000001060	ENSCMIP00000004141	ENSCMIP00000001060	Uncharacterized protein.	Uncharacterized protein.	0.632
pyroxd1	Gfod1	ENSCMIP00000004141	ENSCMIP00000016609	Uncharacterized protein.	Uncharacterized protein.	0.590
pyroxd1	Mchr1	ENSCMIP00000004141	ENSCMIP00000009760	Uncharacterized protein.	G_PROTEIN_RECEP_F1_2 domain-containing protein.	0.633
pyroxd1	fdxr	ENSCMIP00000004141	ENSCMIP00000006190	Uncharacterized protein.	NADPH:adrenodoxin oxidoreductase, mitochondrial.	0.632
pyroxd1	gfod2	ENSCMIP00000004141	ENSCMIP00000046067	Uncharacterized protein.	GFO_IDH_MocA domain-containing protein.	0.590
pyroxd1	mrps35	ENSCMIP00000004141	ENSCMIP00000020735	Uncharacterized protein.	MRP-S28 domain-containing protein.	0.716
pyroxd1	recql	ENSCMIP00000004141	ENSCMIP00000039617	Uncharacterized protein.	ATP-dependent DNA helicase; Belongs to the helicase family. RecQ subfamily.	0.693
pyroxd1	rtcb	ENSCMIP00000004141	ENSCMIP00000048442	Uncharacterized protein.	RNA-splicing ligase RtcB homolog; Catalytic subunit of the tRNA-splicing ligase complex that acts by directly joining spliced tRNA halves to mature-sized tRNAs by incorporating the precursor-derived splice junction phosphate into the mature tRNA as a canonical 3',5'-phosphodiester. May act as an RNA ligase with broad substrate specificity, and may function toward other RNAs.	0.868
pyroxd1	suox	ENSCMIP00000004141	ENSCMIP00000003314	Uncharacterized protein.	Cytochrome b5 heme-binding domain-containing protein.	0.651
pyroxd1	uprt	ENSCMIP00000004141	ENSCMIP00000039131	Uncharacterized protein.	Uncharacterized protein.	0.962
recql	pyroxd1	ENSCMIP00000039617	ENSCMIP00000004141	ATP-dependent DNA helicase; Belongs to the helicase family. RecQ subfamily.	Uncharacterized protein.	0.693
rtcb	pyroxd1	ENSCMIP00000048442	ENSCMIP00000004141	RNA-splicing ligase RtcB homolog; Catalytic subunit of the tRNA-splicing ligase complex that acts by directly joining spliced tRNA halves to mature-sized tRNAs by incorporating the precursor-derived splice junction phosphate into the mature tRNA as a canonical 3',5'-phosphodiester. May act as an RNA ligase with broad substrate specificity, and may function toward other RNAs.	Uncharacterized protein.	0.868
suox	pyroxd1	ENSCMIP00000003314	ENSCMIP00000004141	Cytochrome b5 heme-binding domain-containing protein.	Uncharacterized protein.	0.651
uprt	pyroxd1	ENSCMIP00000039131	ENSCMIP00000004141	Uncharacterized protein.	Uncharacterized protein.	0.962