STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSCMIP00000004154Uncharacterized protein. (71 aa)    
Predicted Functional Partners:
appl1
PID domain-containing protein.
   
 
 0.792
appl2
Uncharacterized protein.
   
 
 0.792
myo6
Myosin-VI; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family.
    
 
 0.737
tgfbr3
Transforming growth factor beta receptor type 3-like protein.
    
 0.568
nrp1
Neuropilin; Belongs to the neuropilin family.
    
 
 0.531
LOC103172825
Transforming growth factor beta; Belongs to the TGF-beta family.
     
  0.528
tgfb2
Transforming growth factor beta; Belongs to the TGF-beta family.
     
  0.528
brca2
Tower domain-containing protein.
      
 0.527
espn
Uncharacterized protein.
      
 0.470
ntrk3
Tyrosine-protein kinase receptor.
   
 
 0.465
Your Current Organism:
Callorhinchus milii
NCBI taxonomy Id: 7868
Other names: Australian ghost shark, C. milii, elephant fish, elephant shark, ghost shark, makorepe, plownose chimaera, reperepe
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