STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSCMIP00000004257Histone H2B; Belongs to the histone H2B family. (126 aa)    
Predicted Functional Partners:
LOC103187764
Histone H2A; Belongs to the histone H2A family.
   
 0.948
h3f3b
Histone domain-containing protein.
 
 
 0.941
LOC103172042
Histone H2A; Belongs to the histone H2A family.
 
 0.902
ENSCMIP00000011655
Histone H2A; Belongs to the histone H2A family.
 
 0.899
ENSCMIP00000047395
Histone H2A; Belongs to the histone H2A family.
 
 0.894
ENSCMIP00000011641
Histone H3; Belongs to the histone H3 family.
 
 
 0.892
LOC103173215
Histone H3; Belongs to the histone H3 family.
 
 
 0.885
leo1
RNA polymerase-associated protein LEO1.
    
 0.876
h3f3a
Histone domain-containing protein.
 
 
 0.873
ctr9
TPR_REGION domain-containing protein.
 
 
 0.854
Your Current Organism:
Callorhinchus milii
NCBI taxonomy Id: 7868
Other names: Australian ghost shark, C. milii, elephant fish, elephant shark, ghost shark, makorepe, plownose chimaera, reperepe
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.