Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Rpl36alUncharacterized protein; Belongs to the eukaryotic ribosomal protein eL42 family. (151 aa)    
Predicted Functional Partners:
rpl30
Ribosomal_L7Ae domain-containing protein.
   
 0.999
fau
Ubiquitin-like domain-containing protein.
   
 0.999
rps27a
Ubiquitin-like domain-containing protein.
   
 0.999
rpl23
60S ribosomal protein L23; Belongs to the universal ribosomal protein uL14 family.
   
 0.999
uba52
Ribosomal protein L40-like isoform 1.
   
 0.999
rpl21
60S ribosomal protein L21.
  
 0.999
rpl36
60S ribosomal protein L36; Belongs to the eukaryotic ribosomal protein eL36 family.
   
 0.999
rpl26l1
Ribosomal protein L26 isoform 1.
   
 0.999
rpl27a
Ribosomal_L18e/L15P domain-containing protein; Belongs to the universal ribosomal protein uL15 family.
   
 0.999
rpl13
60S ribosomal protein L13; Belongs to the eukaryotic ribosomal protein eL13 family.
   
 0.999
Your Current Organism:
Callorhinchus milii
NCBI taxonomy Id: 7868
Other names: Australian ghost shark, C. milii, elephant fish, elephant shark, ghost shark, makorepe, plownose chimaera, reperepe
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