ENSCMIP00000004275 protein (Callorhinchus milii)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

ENSCMIP00000004275

Uncharacterized protein. (124 aa)

Predicted Functional Partners:

LOC103171775

0.899

Kcnk12

0.897

Kcnk18

0.577

kcnk1

0.554

LOC103178515

0.532

kcnk10

0.444

kcnk2

0.444

Kcnk5

0.426

Kcng3

0.410

Your Current Organism:

Callorhinchus milii

NCBI taxonomy Id: 7868
Other names: Australian ghost shark, C. milii, elephant fish, elephant shark, ghost shark, makorepe, plownose chimaera, reperepe

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSCMIP00000004275	Kcng3	ENSCMIP00000004275	ENSCMIP00000008731	Uncharacterized protein.	Uncharacterized protein; Belongs to the potassium channel family.	0.410
ENSCMIP00000004275	Kcnk12	ENSCMIP00000004275	ENSCMIP00000006792	Uncharacterized protein.	Ion_trans_2 domain-containing protein; Belongs to the two pore domain potassium channel (TC 1.A.1.8) family.	0.897
ENSCMIP00000004275	Kcnk18	ENSCMIP00000004275	ENSCMIP00000045022	Uncharacterized protein.	Uncharacterized protein; Belongs to the two pore domain potassium channel (TC 1.A.1.8) family.	0.577
ENSCMIP00000004275	Kcnk5	ENSCMIP00000004275	ENSCMIP00000020857	Uncharacterized protein.	Uncharacterized protein; Belongs to the two pore domain potassium channel (TC 1.A.1.8) family.	0.426
ENSCMIP00000004275	LOC103171775	ENSCMIP00000004275	ENSCMIP00000013779	Uncharacterized protein.	Ion_trans_2 domain-containing protein; Belongs to the two pore domain potassium channel (TC 1.A.1.8) family.	0.899
ENSCMIP00000004275	LOC103178515	ENSCMIP00000004275	ENSCMIP00000002776	Uncharacterized protein.	Uncharacterized protein; Belongs to the two pore domain potassium channel (TC 1.A.1.8) family.	0.532
ENSCMIP00000004275	kcnk1	ENSCMIP00000004275	ENSCMIP00000045405	Uncharacterized protein.	Uncharacterized protein; Belongs to the two pore domain potassium channel (TC 1.A.1.8) family.	0.554
ENSCMIP00000004275	kcnk10	ENSCMIP00000004275	ENSCMIP00000006186	Uncharacterized protein.	Uncharacterized protein; Belongs to the two pore domain potassium channel (TC 1.A.1.8) family.	0.444
ENSCMIP00000004275	kcnk2	ENSCMIP00000004275	ENSCMIP00000028003	Uncharacterized protein.	Uncharacterized protein; Belongs to the two pore domain potassium channel (TC 1.A.1.8) family.	0.444
Kcng3	ENSCMIP00000004275	ENSCMIP00000008731	ENSCMIP00000004275	Uncharacterized protein; Belongs to the potassium channel family.	Uncharacterized protein.	0.410
Kcng3	Kcnk12	ENSCMIP00000008731	ENSCMIP00000006792	Uncharacterized protein; Belongs to the potassium channel family.	Ion_trans_2 domain-containing protein; Belongs to the two pore domain potassium channel (TC 1.A.1.8) family.	0.410
Kcng3	LOC103171775	ENSCMIP00000008731	ENSCMIP00000013779	Uncharacterized protein; Belongs to the potassium channel family.	Ion_trans_2 domain-containing protein; Belongs to the two pore domain potassium channel (TC 1.A.1.8) family.	0.410
Kcnk12	ENSCMIP00000004275	ENSCMIP00000006792	ENSCMIP00000004275	Ion_trans_2 domain-containing protein; Belongs to the two pore domain potassium channel (TC 1.A.1.8) family.	Uncharacterized protein.	0.897
Kcnk12	Kcng3	ENSCMIP00000006792	ENSCMIP00000008731	Ion_trans_2 domain-containing protein; Belongs to the two pore domain potassium channel (TC 1.A.1.8) family.	Uncharacterized protein; Belongs to the potassium channel family.	0.410
Kcnk12	Kcnk18	ENSCMIP00000006792	ENSCMIP00000045022	Ion_trans_2 domain-containing protein; Belongs to the two pore domain potassium channel (TC 1.A.1.8) family.	Uncharacterized protein; Belongs to the two pore domain potassium channel (TC 1.A.1.8) family.	0.577
Kcnk12	Kcnk5	ENSCMIP00000006792	ENSCMIP00000020857	Ion_trans_2 domain-containing protein; Belongs to the two pore domain potassium channel (TC 1.A.1.8) family.	Uncharacterized protein; Belongs to the two pore domain potassium channel (TC 1.A.1.8) family.	0.426
Kcnk12	LOC103178515	ENSCMIP00000006792	ENSCMIP00000002776	Ion_trans_2 domain-containing protein; Belongs to the two pore domain potassium channel (TC 1.A.1.8) family.	Uncharacterized protein; Belongs to the two pore domain potassium channel (TC 1.A.1.8) family.	0.532
Kcnk12	kcnk1	ENSCMIP00000006792	ENSCMIP00000045405	Ion_trans_2 domain-containing protein; Belongs to the two pore domain potassium channel (TC 1.A.1.8) family.	Uncharacterized protein; Belongs to the two pore domain potassium channel (TC 1.A.1.8) family.	0.554
Kcnk12	kcnk10	ENSCMIP00000006792	ENSCMIP00000006186	Ion_trans_2 domain-containing protein; Belongs to the two pore domain potassium channel (TC 1.A.1.8) family.	Uncharacterized protein; Belongs to the two pore domain potassium channel (TC 1.A.1.8) family.	0.444
Kcnk12	kcnk2	ENSCMIP00000006792	ENSCMIP00000028003	Ion_trans_2 domain-containing protein; Belongs to the two pore domain potassium channel (TC 1.A.1.8) family.	Uncharacterized protein; Belongs to the two pore domain potassium channel (TC 1.A.1.8) family.	0.444