ENSCMIP00000004326 protein (Callorhinchus milii)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

ENSCMIP00000004326

Nuclear receptor domain-containing protein. (438 aa)

Predicted Functional Partners:

nr0b2

0.814

ube2i

0.703

ppargc1a

0.691

star

0.690

ENSCMIP00000003233

0.688

ENSCMIP00000014590

0.688

LOC103186185

0.688

wt1

0.664

ENSCMIP00000003050

0.652

Ncoa2

0.652

Your Current Organism:

Callorhinchus milii

NCBI taxonomy Id: 7868
Other names: Australian ghost shark, C. milii, elephant fish, elephant shark, ghost shark, makorepe, plownose chimaera, reperepe

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSCMIP00000003050	ENSCMIP00000004326	ENSCMIP00000003050	ENSCMIP00000004326	DUF1518 domain-containing protein.	Nuclear receptor domain-containing protein.	0.652
ENSCMIP00000003050	Ncoa2	ENSCMIP00000003050	ENSCMIP00000003058	DUF1518 domain-containing protein.	Uncharacterized protein.	0.943
ENSCMIP00000003050	ppargc1a	ENSCMIP00000003050	ENSCMIP00000023791	DUF1518 domain-containing protein.	RRM domain-containing protein.	0.528
ENSCMIP00000003233	ENSCMIP00000004326	ENSCMIP00000003233	ENSCMIP00000004326	Uncharacterized protein.	Nuclear receptor domain-containing protein.	0.688
ENSCMIP00000003233	star	ENSCMIP00000003233	ENSCMIP00000014915	Uncharacterized protein.	Steroidogenic acute regulatory protein, mitochondrial; Plays a key role in steroid hormone synthesis by enhancing the metabolism of cholesterol into pregnenolone. Mediates the transfer of cholesterol from the outer mitochondrial membrane to the inner mitochondrial membrane where it is cleaved to pregnenolone.	0.520
ENSCMIP00000003233	wt1	ENSCMIP00000003233	ENSCMIP00000043610	Uncharacterized protein.	Wilms tumor 1.	0.480
ENSCMIP00000004326	ENSCMIP00000003050	ENSCMIP00000004326	ENSCMIP00000003050	Nuclear receptor domain-containing protein.	DUF1518 domain-containing protein.	0.652
ENSCMIP00000004326	ENSCMIP00000003233	ENSCMIP00000004326	ENSCMIP00000003233	Nuclear receptor domain-containing protein.	Uncharacterized protein.	0.688
ENSCMIP00000004326	ENSCMIP00000014590	ENSCMIP00000004326	ENSCMIP00000014590	Nuclear receptor domain-containing protein.	NR LBD domain-containing protein.	0.688
ENSCMIP00000004326	LOC103186185	ENSCMIP00000004326	ENSCMIP00000028104	Nuclear receptor domain-containing protein.	NR LBD domain-containing protein.	0.688
ENSCMIP00000004326	Ncoa2	ENSCMIP00000004326	ENSCMIP00000003058	Nuclear receptor domain-containing protein.	Uncharacterized protein.	0.652
ENSCMIP00000004326	nr0b2	ENSCMIP00000004326	ENSCMIP00000045556	Nuclear receptor domain-containing protein.	NR LBD domain-containing protein.	0.814
ENSCMIP00000004326	ppargc1a	ENSCMIP00000004326	ENSCMIP00000023791	Nuclear receptor domain-containing protein.	RRM domain-containing protein.	0.691
ENSCMIP00000004326	star	ENSCMIP00000004326	ENSCMIP00000014915	Nuclear receptor domain-containing protein.	Steroidogenic acute regulatory protein, mitochondrial; Plays a key role in steroid hormone synthesis by enhancing the metabolism of cholesterol into pregnenolone. Mediates the transfer of cholesterol from the outer mitochondrial membrane to the inner mitochondrial membrane where it is cleaved to pregnenolone.	0.690
ENSCMIP00000004326	ube2i	ENSCMIP00000004326	ENSCMIP00000014219	Nuclear receptor domain-containing protein.	UBIQUITIN_CONJUGAT_2 domain-containing protein; Belongs to the ubiquitin-conjugating enzyme family.	0.703
ENSCMIP00000004326	wt1	ENSCMIP00000004326	ENSCMIP00000043610	Nuclear receptor domain-containing protein.	Wilms tumor 1.	0.664
ENSCMIP00000014590	ENSCMIP00000004326	ENSCMIP00000014590	ENSCMIP00000004326	NR LBD domain-containing protein.	Nuclear receptor domain-containing protein.	0.688
ENSCMIP00000014590	star	ENSCMIP00000014590	ENSCMIP00000014915	NR LBD domain-containing protein.	Steroidogenic acute regulatory protein, mitochondrial; Plays a key role in steroid hormone synthesis by enhancing the metabolism of cholesterol into pregnenolone. Mediates the transfer of cholesterol from the outer mitochondrial membrane to the inner mitochondrial membrane where it is cleaved to pregnenolone.	0.520
ENSCMIP00000014590	wt1	ENSCMIP00000014590	ENSCMIP00000043610	NR LBD domain-containing protein.	Wilms tumor 1.	0.480
LOC103186185	ENSCMIP00000004326	ENSCMIP00000028104	ENSCMIP00000004326	NR LBD domain-containing protein.	Nuclear receptor domain-containing protein.	0.688