STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSCMIP00000004396BHLH domain-containing protein. (154 aa)    
Predicted Functional Partners:
max
BHLH domain-containing protein.
    
 
 0.918
ep400
Uncharacterized protein.
    
 
 0.821
ENSCMIP00000002932
Uncharacterized protein.
    
 
 0.772
mrgbp
Uncharacterized protein.
   
   0.761
brd8
Bromo domain-containing protein.
    
   0.745
yeats4
Uncharacterized protein.
    
   0.688
trrap
Uncharacterized protein; Belongs to the PI3/PI4-kinase family.
    
 
 0.677
meaf6
Uncharacterized protein.
   
   0.658
ruvbl1
RuvB-like helicase; Proposed core component of the chromatin remodeling Ino80 complex which exhibits DNA- and nucleosome-activated ATPase activity and catalyzes ATP-dependent nucleosome sliding.
    
   0.654
jazf1
C2H2-type domain-containing protein.
    
 
 0.648
Your Current Organism:
Callorhinchus milii
NCBI taxonomy Id: 7868
Other names: Australian ghost shark, C. milii, elephant fish, elephant shark, ghost shark, makorepe, plownose chimaera, reperepe
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