STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
nphp4Uncharacterized protein. (1395 aa)    
Predicted Functional Partners:
rpgrip1l
C2 domain-containing protein.
    
 0.955
ENSCMIP00000034954
Uncharacterized protein.
   
 0.916
nphp1
Uncharacterized protein.
   
 0.916
fmnl1
Uncharacterized protein.
    
 0.783
fmnl2
Uncharacterized protein.
    
 0.783
fmnl3
Uncharacterized protein.
    
 0.783
Rpgr
Uncharacterized protein.
   
 
 0.728
lats1
Uncharacterized protein.
    
 0.689
lats2
Uncharacterized protein.
    
 0.689
cep290
CEP209_CC5 domain-containing protein.
    
 
 0.654
Your Current Organism:
Callorhinchus milii
NCBI taxonomy Id: 7868
Other names: Australian ghost shark, C. milii, elephant fish, elephant shark, ghost shark, makorepe, plownose chimaera, reperepe
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.