oplah protein (Callorhinchus milii) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

oplah

Hydantoinase_B domain-containing protein. (396 aa)

Predicted Functional Partners:

LOC103172667

0.951

cndp2

0.704

nudcd1

0.676

ggct

0.576

isoc1

0.554

gclc

0.526

tsr3

0.520

m1ap

0.505

nagk

0.505

LOC103188743

0.493

Your Current Organism:

Callorhinchus milii

NCBI taxonomy Id: 7868
Other names: Australian ghost shark, C. milii, elephant fish, elephant shark, ghost shark, makorepe, plownose chimaera, reperepe

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC103172667	LOC103188743	ENSCMIP00000005402	ENSCMIP00000016529	Uncharacterized protein.	S-(hydroxymethyl)glutathione dehydrogenase; Belongs to the zinc-containing alcohol dehydrogenase family. Class-III subfamily.	0.493
LOC103172667	cndp2	ENSCMIP00000005402	ENSCMIP00000022160	Uncharacterized protein.	M20_dimer domain-containing protein.	0.704
LOC103172667	gclc	ENSCMIP00000005402	ENSCMIP00000039652	Uncharacterized protein.	Uncharacterized protein.	0.950
LOC103172667	ggct	ENSCMIP00000005402	ENSCMIP00000003057	Uncharacterized protein.	Uncharacterized protein.	0.955
LOC103172667	isoc1	ENSCMIP00000005402	ENSCMIP00000011853	Uncharacterized protein.	Isochorismatase domain-containing protein.	0.554
LOC103172667	m1ap	ENSCMIP00000005402	ENSCMIP00000028609	Uncharacterized protein.	Uncharacterized protein.	0.505
LOC103172667	nagk	ENSCMIP00000005402	ENSCMIP00000028692	Uncharacterized protein.	BcrAD_BadFG domain-containing protein.	0.505
LOC103172667	nudcd1	ENSCMIP00000005402	ENSCMIP00000030077	Uncharacterized protein.	CS domain-containing protein.	0.676
LOC103172667	oplah	ENSCMIP00000005402	ENSCMIP00000004534	Uncharacterized protein.	Hydantoinase_B domain-containing protein.	0.951
LOC103172667	tsr3	ENSCMIP00000005402	ENSCMIP00000031141	Uncharacterized protein.	Probable ribosome biogenesis protein; Probable pre-rRNA processing protein involved in ribosome biogenesis.	0.504
LOC103188743	LOC103172667	ENSCMIP00000016529	ENSCMIP00000005402	S-(hydroxymethyl)glutathione dehydrogenase; Belongs to the zinc-containing alcohol dehydrogenase family. Class-III subfamily.	Uncharacterized protein.	0.493
LOC103188743	oplah	ENSCMIP00000016529	ENSCMIP00000004534	S-(hydroxymethyl)glutathione dehydrogenase; Belongs to the zinc-containing alcohol dehydrogenase family. Class-III subfamily.	Hydantoinase_B domain-containing protein.	0.493
cndp2	LOC103172667	ENSCMIP00000022160	ENSCMIP00000005402	M20_dimer domain-containing protein.	Uncharacterized protein.	0.704
cndp2	ggct	ENSCMIP00000022160	ENSCMIP00000003057	M20_dimer domain-containing protein.	Uncharacterized protein.	0.687
cndp2	m1ap	ENSCMIP00000022160	ENSCMIP00000028609	M20_dimer domain-containing protein.	Uncharacterized protein.	0.637
cndp2	nagk	ENSCMIP00000022160	ENSCMIP00000028692	M20_dimer domain-containing protein.	BcrAD_BadFG domain-containing protein.	0.637
cndp2	oplah	ENSCMIP00000022160	ENSCMIP00000004534	M20_dimer domain-containing protein.	Hydantoinase_B domain-containing protein.	0.704
gclc	LOC103172667	ENSCMIP00000039652	ENSCMIP00000005402	Uncharacterized protein.	Uncharacterized protein.	0.950
gclc	ggct	ENSCMIP00000039652	ENSCMIP00000003057	Uncharacterized protein.	Uncharacterized protein.	0.917
gclc	oplah	ENSCMIP00000039652	ENSCMIP00000004534	Uncharacterized protein.	Hydantoinase_B domain-containing protein.	0.526