Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
kiaa1841DUF3342 domain-containing protein. (708 aa)    
Predicted Functional Partners:
lrrc49
Uncharacterized protein.
    
   0.962
nicn1
Uncharacterized protein.
    
   0.962
LOC103179067
Uncharacterized protein.
   
   0.906
ttll1
Uncharacterized protein.
   
   0.906
LOC103174971
Uncharacterized protein.
    
   0.871
tpgs1
Uncharacterized protein.
    
   0.755
fcsk
Uncharacterized protein.
      
 0.632
cog7
Uncharacterized protein.
      
 0.552
ttl
Uncharacterized protein.
   
   0.522
pex13
SH3 domain-containing protein.
 
    
 0.462
Your Current Organism:
Callorhinchus milii
NCBI taxonomy Id: 7868
Other names: Australian ghost shark, C. milii, elephant fish, elephant shark, ghost shark, makorepe, plownose chimaera, reperepe
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