Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
larp4bUncharacterized protein. (1929 aa)    
Predicted Functional Partners:
LOC103183724
WD_REPEATS_REGION domain-containing protein.
    
 
 0.542
LOC103175775
Guanine nucleotide-binding protein subunit beta-2-like 1.
    
 
 0.542
LOC103188335
HTH La-type RNA-binding domain-containing protein.
      
 0.467
atxn2
LsmAD domain-containing protein.
   
 
 0.464
usp10
Ubiquitin carboxyl-terminal hydrolase.
   
 
 0.406
ENSCMIP00000002451
Uncharacterized protein.
    
   0.402
LOC103173878
Uncharacterized protein.
    
   0.402
flnc
Uncharacterized protein.
    
   0.402
flnb
Uncharacterized protein.
    
   0.402
Your Current Organism:
Callorhinchus milii
NCBI taxonomy Id: 7868
Other names: Australian ghost shark, C. milii, elephant fish, elephant shark, ghost shark, makorepe, plownose chimaera, reperepe
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