STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pus10Uncharacterized protein. (454 aa)    
Predicted Functional Partners:
abitram
Uncharacterized protein.
    
   0.585
pus7
TRUD domain-containing protein.
   
  
 0.514
rpusd1
PseudoU_synth_2 domain-containing protein.
      
 0.470
pus7l
TRUD domain-containing protein.
   
  
 0.468
pus1
PseudoU_synth_1 domain-containing protein.
   
  
 0.461
top3b
DNA topoisomerase; Introduces a single-strand break via transesterification at a target site in duplex DNA. Releases the supercoiling and torsional tension of DNA introduced during the DNA replication and transcription by transiently cleaving and rejoining one strand of the DNA duplex. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. Belongs to the type IA topoisomerase family.
 
      0.454
ENSCMIP00000028713
Flavodoxin-like domain-containing protein.
      
 0.449
dkc1
H/ACA ribonucleoprotein complex subunit 4.
   
  
 0.443
ENSCMIP00000012512
PseudoU_synth_1 domain-containing protein.
   
  
 0.431
thumpd2
THUMP domain-containing protein.
      
 0.429
Your Current Organism:
Callorhinchus milii
NCBI taxonomy Id: 7868
Other names: Australian ghost shark, C. milii, elephant fish, elephant shark, ghost shark, makorepe, plownose chimaera, reperepe
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.