Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
ridaRibonuclease. (141 aa)    
Predicted Functional Partners:
LOC103184369
PALP domain-containing protein.
  
 0.811
eef2
Tr-type G domain-containing protein.
   
 0.805
cnot9
Uncharacterized protein.
    
 
 0.725
ENSCMIP00000021136
PALP domain-containing protein.
  
 0.724
clpp
ATP-dependent Clp protease proteolytic subunit.
  
  
 0.717
cnot4
Uncharacterized protein.
    
 
 0.713
ENSCMIP00000010825
PALP domain-containing protein.
  
 0.683
ugcg
Ceramide glucosyltransferase.
  
 0.683
got1
Aspartate aminotransferase.
   
 
 0.665
ENSCMIP00000003348
Uncharacterized protein.
    
   0.645
Your Current Organism:
Callorhinchus milii
NCBI taxonomy Id: 7868
Other names: Australian ghost shark, C. milii, elephant fish, elephant shark, ghost shark, makorepe, plownose chimaera, reperepe
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