itgbl1 protein (Callorhinchus milii) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

itgbl1

Uncharacterized protein. (488 aa)

Predicted Functional Partners:

itga4

0.845

LOC103172032

0.766

LOC103172180

0.766

ENSCMIP00000028889

0.766

itga3

0.764

LOC103191585

0.756

LOC103171972

0.751

ENSCMIP00000003382

0.751

LOC103171582

0.751

itga8

0.751

Your Current Organism:

Callorhinchus milii

NCBI taxonomy Id: 7868
Other names: Australian ghost shark, C. milii, elephant fish, elephant shark, ghost shark, makorepe, plownose chimaera, reperepe

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSCMIP00000003382	ENSCMIP00000028889	ENSCMIP00000003382	ENSCMIP00000028889	Integrin_alpha2 domain-containing protein.	VWFA domain-containing protein.	0.604
ENSCMIP00000003382	LOC103171582	ENSCMIP00000003382	ENSCMIP00000011380	Integrin_alpha2 domain-containing protein.	Uncharacterized protein.	0.665
ENSCMIP00000003382	LOC103171972	ENSCMIP00000003382	ENSCMIP00000003190	Integrin_alpha2 domain-containing protein.	Uncharacterized protein; Belongs to the integrin alpha chain family.	0.665
ENSCMIP00000003382	LOC103172032	ENSCMIP00000003382	ENSCMIP00000004108	Integrin_alpha2 domain-containing protein.	Integrin_alpha2 domain-containing protein; Belongs to the integrin alpha chain family.	0.604
ENSCMIP00000003382	LOC103172180	ENSCMIP00000003382	ENSCMIP00000006084	Integrin_alpha2 domain-containing protein.	Uncharacterized protein.	0.604
ENSCMIP00000003382	LOC103191585	ENSCMIP00000003382	ENSCMIP00000000051	Integrin_alpha2 domain-containing protein.	Uncharacterized protein.	0.604
ENSCMIP00000003382	itga3	ENSCMIP00000003382	ENSCMIP00000021506	Integrin_alpha2 domain-containing protein.	Integrin alpha-3; Belongs to the integrin alpha chain family.	0.754
ENSCMIP00000003382	itga4	ENSCMIP00000003382	ENSCMIP00000033432	Integrin_alpha2 domain-containing protein.	Integrin_alpha2 domain-containing protein; Belongs to the integrin alpha chain family.	0.731
ENSCMIP00000003382	itga8	ENSCMIP00000003382	ENSCMIP00000016887	Integrin_alpha2 domain-containing protein.	Integrin_alpha2 domain-containing protein; Belongs to the integrin alpha chain family.	0.540
ENSCMIP00000003382	itgbl1	ENSCMIP00000003382	ENSCMIP00000004669	Integrin_alpha2 domain-containing protein.	Uncharacterized protein.	0.751
ENSCMIP00000028889	ENSCMIP00000003382	ENSCMIP00000028889	ENSCMIP00000003382	VWFA domain-containing protein.	Integrin_alpha2 domain-containing protein.	0.604
ENSCMIP00000028889	LOC103171582	ENSCMIP00000028889	ENSCMIP00000011380	VWFA domain-containing protein.	Uncharacterized protein.	0.621
ENSCMIP00000028889	LOC103171972	ENSCMIP00000028889	ENSCMIP00000003190	VWFA domain-containing protein.	Uncharacterized protein; Belongs to the integrin alpha chain family.	0.642
ENSCMIP00000028889	LOC103172032	ENSCMIP00000028889	ENSCMIP00000004108	VWFA domain-containing protein.	Integrin_alpha2 domain-containing protein; Belongs to the integrin alpha chain family.	0.564
ENSCMIP00000028889	LOC103172180	ENSCMIP00000028889	ENSCMIP00000006084	VWFA domain-containing protein.	Uncharacterized protein.	0.540
ENSCMIP00000028889	LOC103191585	ENSCMIP00000028889	ENSCMIP00000000051	VWFA domain-containing protein.	Uncharacterized protein.	0.540
ENSCMIP00000028889	itga3	ENSCMIP00000028889	ENSCMIP00000021506	VWFA domain-containing protein.	Integrin alpha-3; Belongs to the integrin alpha chain family.	0.604
ENSCMIP00000028889	itga4	ENSCMIP00000028889	ENSCMIP00000033432	VWFA domain-containing protein.	Integrin_alpha2 domain-containing protein; Belongs to the integrin alpha chain family.	0.701
ENSCMIP00000028889	itga8	ENSCMIP00000028889	ENSCMIP00000016887	VWFA domain-containing protein.	Integrin_alpha2 domain-containing protein; Belongs to the integrin alpha chain family.	0.604
ENSCMIP00000028889	itgbl1	ENSCMIP00000028889	ENSCMIP00000004669	VWFA domain-containing protein.	Uncharacterized protein.	0.766