STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC103173288Saposin B-type domain-containing protein. (449 aa)    
Predicted Functional Partners:
smpd2
Sphingomyelin phosphodiesterase 2-like protein.
      
 0.623
asah1
Uncharacterized protein; Belongs to the acid ceramidase family.
   
 
 0.609
prune2
CRAL-TRIO domain-containing protein.
    
 
 0.559
sptlc1
Aminotran_1_2 domain-containing protein.
      
 0.535
sgms2
Phosphatidylcholine:ceramide cholinephosphotransferase 2.
     
 0.487
sgms1
Phosphatidylcholine:ceramide cholinephosphotransferase 1.
     
 0.487
ugcg
Ceramide glucosyltransferase.
      
 0.454
tmem135
TMEM135_C_rich domain-containing protein.
      
 0.445
gpcpd1
Uncharacterized protein.
   
  
 0.431
psmf1
Uncharacterized protein.
      
 0.428
Your Current Organism:
Callorhinchus milii
NCBI taxonomy Id: 7868
Other names: Australian ghost shark, C. milii, elephant fish, elephant shark, ghost shark, makorepe, plownose chimaera, reperepe
Server load: low (32%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.