Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
LOC103173288Saposin B-type domain-containing protein. (449 aa)    
Predicted Functional Partners:
smpd2
Sphingomyelin phosphodiesterase 2-like protein.
      
 0.833
asah1
Uncharacterized protein; Belongs to the acid ceramidase family.
   
 
 0.755
LOC103176705
Hyaluronidase.
      
 0.676
sgms2
Phosphatidylcholine:ceramide cholinephosphotransferase 2.
     
 0.660
sgms1
Phosphatidylcholine:ceramide cholinephosphotransferase 1.
     
 0.660
smpd4
Uncharacterized protein.
      
 0.651
sptlc1
Aminotran_1_2 domain-containing protein.
      
 0.607
tgs1
Uncharacterized protein.
      
 0.589
galc
Glyco_hydro_59M domain-containing protein.
      
 0.585
acer3
Alkaline ceramidase; Hydrolyzes the sphingolipid ceramide into sphingosine and free fatty acid.
      
 0.555
Your Current Organism:
Callorhinchus milii
NCBI taxonomy Id: 7868
Other names: Australian ghost shark, C. milii, elephant fish, elephant shark, ghost shark, makorepe, plownose chimaera, reperepe
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