ENSCMIP00000004779 protein (Callorhinchus milii)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

ENSCMIP00000004779

Uncharacterized protein. (82 aa)

Predicted Functional Partners:

pisd

0.624

rhoc

0.574

ENSCMIP00000036907

0.574

rhoa

0.574

rhog

0.535

LOC103189355

0.535

LOC103179218

0.529

Arf6

0.529

abi1

0.527

rac1

0.513

Your Current Organism:

Callorhinchus milii

NCBI taxonomy Id: 7868
Other names: Australian ghost shark, C. milii, elephant fish, elephant shark, ghost shark, makorepe, plownose chimaera, reperepe

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Arf6	ENSCMIP00000004779	ENSCMIP00000030532	ENSCMIP00000004779	Uncharacterized protein.	Uncharacterized protein.	0.529
Arf6	LOC103179218	ENSCMIP00000030532	ENSCMIP00000011328	Uncharacterized protein.	ADP-ribosylation factor 6; Belongs to the small GTPase superfamily. Arf family.	0.901
ENSCMIP00000004779	Arf6	ENSCMIP00000004779	ENSCMIP00000030532	Uncharacterized protein.	Uncharacterized protein.	0.529
ENSCMIP00000004779	ENSCMIP00000036907	ENSCMIP00000004779	ENSCMIP00000036907	Uncharacterized protein.	Uncharacterized protein.	0.574
ENSCMIP00000004779	LOC103179218	ENSCMIP00000004779	ENSCMIP00000011328	Uncharacterized protein.	ADP-ribosylation factor 6; Belongs to the small GTPase superfamily. Arf family.	0.529
ENSCMIP00000004779	LOC103189355	ENSCMIP00000004779	ENSCMIP00000019877	Uncharacterized protein.	Rho-related GTP-binding protein RhoG-like protein.	0.535
ENSCMIP00000004779	abi1	ENSCMIP00000004779	ENSCMIP00000002889	Uncharacterized protein.	Uncharacterized protein.	0.527
ENSCMIP00000004779	pisd	ENSCMIP00000004779	ENSCMIP00000010404	Uncharacterized protein.	Phosphatidylserine decarboxylase proenzyme, mitochondrial; Catalyzes the formation of phosphatidylethanolamine (PtdEtn) from phosphatidylserine (PtdSer). Plays a central role in phospholipid metabolism and in the interorganelle trafficking of phosphatidylserine.	0.624
ENSCMIP00000004779	rac1	ENSCMIP00000004779	ENSCMIP00000014308	Uncharacterized protein.	Uncharacterized protein.	0.513
ENSCMIP00000004779	rhoa	ENSCMIP00000004779	ENSCMIP00000043905	Uncharacterized protein.	Uncharacterized protein.	0.574
ENSCMIP00000004779	rhoc	ENSCMIP00000004779	ENSCMIP00000031196	Uncharacterized protein.	Uncharacterized protein.	0.574
ENSCMIP00000004779	rhog	ENSCMIP00000004779	ENSCMIP00000003205	Uncharacterized protein.	Rho-related GTP-binding protein RhoG-like protein.	0.535
ENSCMIP00000036907	ENSCMIP00000004779	ENSCMIP00000036907	ENSCMIP00000004779	Uncharacterized protein.	Uncharacterized protein.	0.574
ENSCMIP00000036907	LOC103189355	ENSCMIP00000036907	ENSCMIP00000019877	Uncharacterized protein.	Rho-related GTP-binding protein RhoG-like protein.	0.515
ENSCMIP00000036907	rac1	ENSCMIP00000036907	ENSCMIP00000014308	Uncharacterized protein.	Uncharacterized protein.	0.589
ENSCMIP00000036907	rhog	ENSCMIP00000036907	ENSCMIP00000003205	Uncharacterized protein.	Rho-related GTP-binding protein RhoG-like protein.	0.515
LOC103179218	Arf6	ENSCMIP00000011328	ENSCMIP00000030532	ADP-ribosylation factor 6; Belongs to the small GTPase superfamily. Arf family.	Uncharacterized protein.	0.901
LOC103179218	ENSCMIP00000004779	ENSCMIP00000011328	ENSCMIP00000004779	ADP-ribosylation factor 6; Belongs to the small GTPase superfamily. Arf family.	Uncharacterized protein.	0.529
LOC103189355	ENSCMIP00000004779	ENSCMIP00000019877	ENSCMIP00000004779	Rho-related GTP-binding protein RhoG-like protein.	Uncharacterized protein.	0.535
LOC103189355	ENSCMIP00000036907	ENSCMIP00000019877	ENSCMIP00000036907	Rho-related GTP-binding protein RhoG-like protein.	Uncharacterized protein.	0.515