Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ENSCMIP00000004816TFIIIC_sub6 domain-containing protein. (125 aa)    
Predicted Functional Partners:
gtf3c3
Uncharacterized protein.
     
  0.941
gtf3c2
WD_REPEATS_REGION domain-containing protein.
     
  0.941
gtf3c1
B-block_TFIIIC domain-containing protein.
     
  0.833
gtf3c4
Uncharacterized protein.
     
  0.833
gtf3c5
Uncharacterized protein.
     
  0.833
ENSCMIP00000033574
CYCLIN domain-containing protein.
     
  0.699
Bdp1
SANT domain-containing protein.
     
  0.687
znf512b
Uncharacterized protein.
     
  0.546
znf512
Uncharacterized protein.
     
  0.546
gtf3a
Uncharacterized protein.
     
  0.513
Your Current Organism:
Callorhinchus milii
NCBI taxonomy Id: 7868
Other names: Australian ghost shark, C. milii, elephant fish, elephant shark, ghost shark, makorepe, plownose chimaera, reperepe
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