LOC103173319 protein (Callorhinchus milii) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

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[Homology]

Score

LOC103173319

Uncharacterized protein. (274 aa)

Predicted Functional Partners:

ENSCMIP00000047107

0.930

LOC103171966

0.926

LOC103185686

0.906

gata6

0.902

Gata2

0.900

tal1

0.799

zfpm1

0.786

glrx3

0.709

lmo2

0.698

ep300

0.696

Your Current Organism:

Callorhinchus milii

NCBI taxonomy Id: 7868
Other names: Australian ghost shark, C. milii, elephant fish, elephant shark, ghost shark, makorepe, plownose chimaera, reperepe

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TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSCMIP00000047107	Gata2	ENSCMIP00000047107	ENSCMIP00000029901	Uncharacterized protein.	Uncharacterized protein.	0.929
ENSCMIP00000047107	LOC103173319	ENSCMIP00000047107	ENSCMIP00000004821	Uncharacterized protein.	Uncharacterized protein.	0.930
ENSCMIP00000047107	LOC103185686	ENSCMIP00000047107	ENSCMIP00000032418	Uncharacterized protein.	Uncharacterized protein.	0.851
ENSCMIP00000047107	ep300	ENSCMIP00000047107	ENSCMIP00000011493	Uncharacterized protein.	Uncharacterized protein.	0.539
ENSCMIP00000047107	gata6	ENSCMIP00000047107	ENSCMIP00000023045	Uncharacterized protein.	Transcription factor GATA-6-like protein.	0.699
ENSCMIP00000047107	lmo2	ENSCMIP00000047107	ENSCMIP00000037515	Uncharacterized protein.	Uncharacterized protein.	0.603
ENSCMIP00000047107	tal1	ENSCMIP00000047107	ENSCMIP00000047260	Uncharacterized protein.	BHLH domain-containing protein.	0.672
ENSCMIP00000047107	zfpm1	ENSCMIP00000047107	ENSCMIP00000036339	Uncharacterized protein.	Uncharacterized protein.	0.664
Gata2	ENSCMIP00000047107	ENSCMIP00000029901	ENSCMIP00000047107	Uncharacterized protein.	Uncharacterized protein.	0.929
Gata2	LOC103173319	ENSCMIP00000029901	ENSCMIP00000004821	Uncharacterized protein.	Uncharacterized protein.	0.900
Gata2	ep300	ENSCMIP00000029901	ENSCMIP00000011493	Uncharacterized protein.	Uncharacterized protein.	0.696
Gata2	glrx3	ENSCMIP00000029901	ENSCMIP00000041889	Uncharacterized protein.	Uncharacterized protein.	0.709
Gata2	lmo2	ENSCMIP00000029901	ENSCMIP00000037515	Uncharacterized protein.	Uncharacterized protein.	0.698
Gata2	tal1	ENSCMIP00000029901	ENSCMIP00000047260	Uncharacterized protein.	BHLH domain-containing protein.	0.858
Gata2	zfpm1	ENSCMIP00000029901	ENSCMIP00000036339	Uncharacterized protein.	Uncharacterized protein.	0.786
LOC103171966	LOC103173319	ENSCMIP00000003092	ENSCMIP00000004821	Uncharacterized protein.	Uncharacterized protein.	0.926
LOC103171966	ep300	ENSCMIP00000003092	ENSCMIP00000011493	Uncharacterized protein.	Uncharacterized protein.	0.851
LOC103171966	lmo2	ENSCMIP00000003092	ENSCMIP00000037515	Uncharacterized protein.	Uncharacterized protein.	0.982
LOC103171966	tal1	ENSCMIP00000003092	ENSCMIP00000047260	Uncharacterized protein.	BHLH domain-containing protein.	0.993
LOC103171966	zfpm1	ENSCMIP00000003092	ENSCMIP00000036339	Uncharacterized protein.	Uncharacterized protein.	0.998