STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC103174593Lipoyl-binding domain-containing protein. (104 aa)    
Predicted Functional Partners:
pc
Uncharacterized protein.
  
 0.951
pccb
Uncharacterized protein.
 
 0.938
LOC103186998
Uncharacterized protein.
 
      0.899
LOC103174513
Carboxyl_trans domain-containing protein.
  
 0.867
LOC103189135
Uncharacterized protein.
  
 0.867
mccc2
Uncharacterized protein.
  
 0.867
nelfb
Uncharacterized protein.
   
 0.849
supt4h1
Transcription elongation factor SPT4; Component of the DRB sensitivity-inducing factor complex (DSIF complex), which regulates transcription elongation by RNA polymerase II; Belongs to the SPT4 family.
    
 0.731
supt5h
Transcription elongation factor SPT5.
    
 0.726
polr2f
Uncharacterized protein.
   
  0.707
Your Current Organism:
Callorhinchus milii
NCBI taxonomy Id: 7868
Other names: Australian ghost shark, C. milii, elephant fish, elephant shark, ghost shark, makorepe, plownose chimaera, reperepe
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