psmf1 protein (Callorhinchus milii) - STRING interaction network

Nodes:

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

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second shell of interactors

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proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

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Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

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textmining

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experimentally determined

co-expression

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gene neighborhood

gene co-occurrence

gene fusions

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[Homology]

Score

psmf1

Uncharacterized protein. (262 aa)

Predicted Functional Partners:

psmb1

0.975

psmb4

0.974

psmg2

0.968

psma1

0.949

psma2

0.938

psmb2

0.938

psma5

0.937

LOC103171909

0.934

psmb3

0.931

LOC103174436

0.866

Your Current Organism:

Callorhinchus milii

NCBI taxonomy Id: 7868
Other names: Australian ghost shark, C. milii, elephant fish, elephant shark, ghost shark, makorepe, plownose chimaera, reperepe

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC103171909	LOC103174436	ENSCMIP00000002415	ENSCMIP00000003447	Proteasome subunit alpha type.	Uncharacterized protein.	0.999
LOC103171909	psma1	ENSCMIP00000002415	ENSCMIP00000034109	Proteasome subunit alpha type.	Proteasome endopeptidase complex.	0.999
LOC103171909	psma2	ENSCMIP00000002415	ENSCMIP00000002462	Proteasome subunit alpha type.	Proteasome endopeptidase complex.	0.999
LOC103171909	psma5	ENSCMIP00000002415	ENSCMIP00000004740	Proteasome subunit alpha type.	Proteasome subunit alpha type.	0.999
LOC103171909	psmb1	ENSCMIP00000002415	ENSCMIP00000006386	Proteasome subunit alpha type.	Proteasome subunit beta.	0.999
LOC103171909	psmb2	ENSCMIP00000002415	ENSCMIP00000012254	Proteasome subunit alpha type.	Proteasome subunit beta.	0.999
LOC103171909	psmb3	ENSCMIP00000002415	ENSCMIP00000010819	Proteasome subunit alpha type.	Proteasome subunit beta.	0.999
LOC103171909	psmb4	ENSCMIP00000002415	ENSCMIP00000005209	Proteasome subunit alpha type.	Proteasome subunit beta.	0.999
LOC103171909	psmf1	ENSCMIP00000002415	ENSCMIP00000004925	Proteasome subunit alpha type.	Uncharacterized protein.	0.934
LOC103171909	psmg2	ENSCMIP00000002415	ENSCMIP00000035575	Proteasome subunit alpha type.	Proteasome assembly chaperone 2; Chaperone protein which promotes assembly of the 20S proteasome as part of a heterodimer with PSMG1. Belongs to the PSMG2 family.	0.989
LOC103174436	LOC103171909	ENSCMIP00000003447	ENSCMIP00000002415	Uncharacterized protein.	Proteasome subunit alpha type.	0.999
LOC103174436	psma1	ENSCMIP00000003447	ENSCMIP00000034109	Uncharacterized protein.	Proteasome endopeptidase complex.	0.999
LOC103174436	psma2	ENSCMIP00000003447	ENSCMIP00000002462	Uncharacterized protein.	Proteasome endopeptidase complex.	0.999
LOC103174436	psma5	ENSCMIP00000003447	ENSCMIP00000004740	Uncharacterized protein.	Proteasome subunit alpha type.	0.999
LOC103174436	psmb1	ENSCMIP00000003447	ENSCMIP00000006386	Uncharacterized protein.	Proteasome subunit beta.	0.999
LOC103174436	psmb2	ENSCMIP00000003447	ENSCMIP00000012254	Uncharacterized protein.	Proteasome subunit beta.	0.999
LOC103174436	psmb3	ENSCMIP00000003447	ENSCMIP00000010819	Uncharacterized protein.	Proteasome subunit beta.	0.999
LOC103174436	psmb4	ENSCMIP00000003447	ENSCMIP00000005209	Uncharacterized protein.	Proteasome subunit beta.	0.999
LOC103174436	psmf1	ENSCMIP00000003447	ENSCMIP00000004925	Uncharacterized protein.	Uncharacterized protein.	0.866
LOC103174436	psmg2	ENSCMIP00000003447	ENSCMIP00000035575	Uncharacterized protein.	Proteasome assembly chaperone 2; Chaperone protein which promotes assembly of the 20S proteasome as part of a heterodimer with PSMG1. Belongs to the PSMG2 family.	0.978