ENSCMIP00000004945 protein (Callorhinchus milii)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

ENSCMIP00000004945

Uncharacterized protein. (345 aa)

Predicted Functional Partners:

rabggtb

0.999

chm

0.981

rab1a

0.843

rab22a

0.842

rab39a

0.830

rab24

0.788

ENSCMIP00000014657

0.765

rab9a

0.749

rab7b

0.680

ENSCMIP00000003476

0.680

Your Current Organism:

Callorhinchus milii

NCBI taxonomy Id: 7868
Other names: Australian ghost shark, C. milii, elephant fish, elephant shark, ghost shark, makorepe, plownose chimaera, reperepe

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSCMIP00000003476	ENSCMIP00000004945	ENSCMIP00000003476	ENSCMIP00000004945	Uncharacterized protein.	Uncharacterized protein.	0.680
ENSCMIP00000003476	chm	ENSCMIP00000003476	ENSCMIP00000011599	Uncharacterized protein.	Uncharacterized protein.	0.681
ENSCMIP00000003476	rab22a	ENSCMIP00000003476	ENSCMIP00000035503	Uncharacterized protein.	Uncharacterized protein.	0.471
ENSCMIP00000003476	rab24	ENSCMIP00000003476	ENSCMIP00000010960	Uncharacterized protein.	Ras-related protein Rab-24.	0.471
ENSCMIP00000003476	rabggtb	ENSCMIP00000003476	ENSCMIP00000021008	Uncharacterized protein.	Geranylgeranyl transferase type-2 subunit beta; Catalyzes the transfer of a geranylgeranyl moiety from geranylgeranyl diphosphate to both cysteines of proteins with the C- terminal sequence -XXCC, -XCXC and -CCXX.	0.723
ENSCMIP00000004945	ENSCMIP00000003476	ENSCMIP00000004945	ENSCMIP00000003476	Uncharacterized protein.	Uncharacterized protein.	0.680
ENSCMIP00000004945	ENSCMIP00000014657	ENSCMIP00000004945	ENSCMIP00000014657	Uncharacterized protein.	Uncharacterized protein.	0.765
ENSCMIP00000004945	chm	ENSCMIP00000004945	ENSCMIP00000011599	Uncharacterized protein.	Uncharacterized protein.	0.981
ENSCMIP00000004945	rab1a	ENSCMIP00000004945	ENSCMIP00000049197	Uncharacterized protein.	Uncharacterized protein.	0.843
ENSCMIP00000004945	rab22a	ENSCMIP00000004945	ENSCMIP00000035503	Uncharacterized protein.	Uncharacterized protein.	0.842
ENSCMIP00000004945	rab24	ENSCMIP00000004945	ENSCMIP00000010960	Uncharacterized protein.	Ras-related protein Rab-24.	0.788
ENSCMIP00000004945	rab39a	ENSCMIP00000004945	ENSCMIP00000020084	Uncharacterized protein.	Uncharacterized protein.	0.830
ENSCMIP00000004945	rab7b	ENSCMIP00000004945	ENSCMIP00000003472	Uncharacterized protein.	Uncharacterized protein.	0.680
ENSCMIP00000004945	rab9a	ENSCMIP00000004945	ENSCMIP00000021885	Uncharacterized protein.	Ras-related protein Rab-9A-like protein.	0.749
ENSCMIP00000004945	rabggtb	ENSCMIP00000004945	ENSCMIP00000021008	Uncharacterized protein.	Geranylgeranyl transferase type-2 subunit beta; Catalyzes the transfer of a geranylgeranyl moiety from geranylgeranyl diphosphate to both cysteines of proteins with the C- terminal sequence -XXCC, -XCXC and -CCXX.	0.999
ENSCMIP00000014657	ENSCMIP00000004945	ENSCMIP00000014657	ENSCMIP00000004945	Uncharacterized protein.	Uncharacterized protein.	0.765
ENSCMIP00000014657	chm	ENSCMIP00000014657	ENSCMIP00000011599	Uncharacterized protein.	Uncharacterized protein.	0.602
ENSCMIP00000014657	rab22a	ENSCMIP00000014657	ENSCMIP00000035503	Uncharacterized protein.	Uncharacterized protein.	0.447
ENSCMIP00000014657	rab9a	ENSCMIP00000014657	ENSCMIP00000021885	Uncharacterized protein.	Ras-related protein Rab-9A-like protein.	0.510
ENSCMIP00000014657	rabggtb	ENSCMIP00000014657	ENSCMIP00000021008	Uncharacterized protein.	Geranylgeranyl transferase type-2 subunit beta; Catalyzes the transfer of a geranylgeranyl moiety from geranylgeranyl diphosphate to both cysteines of proteins with the C- terminal sequence -XXCC, -XCXC and -CCXX.	0.716