ENSCMIP00000004983 protein (Callorhinchus milii)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

ENSCMIP00000004983

Uncharacterized protein. (167 aa)

Predicted Functional Partners:

nup107

0.831

nup43

0.817

ENSCMIP00000016713

0.810

nup153

0.810

nup133

0.797

nup85

0.789

nup160

0.747

kpnb1

0.747

nup35

0.741

ENSCMIP00000004712

0.722

Your Current Organism:

Callorhinchus milii

NCBI taxonomy Id: 7868
Other names: Australian ghost shark, C. milii, elephant fish, elephant shark, ghost shark, makorepe, plownose chimaera, reperepe

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSCMIP00000004712	ENSCMIP00000004983	ENSCMIP00000004712	ENSCMIP00000004983	RanBD1 domain-containing protein.	Uncharacterized protein.	0.722
ENSCMIP00000004712	ENSCMIP00000016713	ENSCMIP00000004712	ENSCMIP00000016713	RanBD1 domain-containing protein.	Uncharacterized protein.	0.947
ENSCMIP00000004712	kpnb1	ENSCMIP00000004712	ENSCMIP00000037311	RanBD1 domain-containing protein.	Importin N-terminal domain-containing protein.	0.933
ENSCMIP00000004712	nup107	ENSCMIP00000004712	ENSCMIP00000025531	RanBD1 domain-containing protein.	Nuclear pore complex protein; Functions as a component of the nuclear pore complex (NPC).	0.977
ENSCMIP00000004712	nup133	ENSCMIP00000004712	ENSCMIP00000017306	RanBD1 domain-containing protein.	Uncharacterized protein.	0.976
ENSCMIP00000004712	nup153	ENSCMIP00000004712	ENSCMIP00000016878	RanBD1 domain-containing protein.	Uncharacterized protein.	0.947
ENSCMIP00000004712	nup160	ENSCMIP00000004712	ENSCMIP00000028914	RanBD1 domain-containing protein.	Uncharacterized protein.	0.952
ENSCMIP00000004712	nup35	ENSCMIP00000004712	ENSCMIP00000034072	RanBD1 domain-containing protein.	Nucleoporin NUP53; Functions as a component of the nuclear pore complex (NPC). Belongs to the Nup35 family.	0.870
ENSCMIP00000004712	nup43	ENSCMIP00000004712	ENSCMIP00000017808	RanBD1 domain-containing protein.	WD_REPEATS_REGION domain-containing protein.	0.942
ENSCMIP00000004712	nup85	ENSCMIP00000004712	ENSCMIP00000001318	RanBD1 domain-containing protein.	Nuclear pore complex protein Nup85; Functions as a component of the nuclear pore complex (NPC).	0.976
ENSCMIP00000004983	ENSCMIP00000004712	ENSCMIP00000004983	ENSCMIP00000004712	Uncharacterized protein.	RanBD1 domain-containing protein.	0.722
ENSCMIP00000004983	ENSCMIP00000016713	ENSCMIP00000004983	ENSCMIP00000016713	Uncharacterized protein.	Uncharacterized protein.	0.810
ENSCMIP00000004983	kpnb1	ENSCMIP00000004983	ENSCMIP00000037311	Uncharacterized protein.	Importin N-terminal domain-containing protein.	0.747
ENSCMIP00000004983	nup107	ENSCMIP00000004983	ENSCMIP00000025531	Uncharacterized protein.	Nuclear pore complex protein; Functions as a component of the nuclear pore complex (NPC).	0.831
ENSCMIP00000004983	nup133	ENSCMIP00000004983	ENSCMIP00000017306	Uncharacterized protein.	Uncharacterized protein.	0.797
ENSCMIP00000004983	nup153	ENSCMIP00000004983	ENSCMIP00000016878	Uncharacterized protein.	Uncharacterized protein.	0.810
ENSCMIP00000004983	nup160	ENSCMIP00000004983	ENSCMIP00000028914	Uncharacterized protein.	Uncharacterized protein.	0.747
ENSCMIP00000004983	nup35	ENSCMIP00000004983	ENSCMIP00000034072	Uncharacterized protein.	Nucleoporin NUP53; Functions as a component of the nuclear pore complex (NPC). Belongs to the Nup35 family.	0.741
ENSCMIP00000004983	nup43	ENSCMIP00000004983	ENSCMIP00000017808	Uncharacterized protein.	WD_REPEATS_REGION domain-containing protein.	0.817
ENSCMIP00000004983	nup85	ENSCMIP00000004983	ENSCMIP00000001318	Uncharacterized protein.	Nuclear pore complex protein Nup85; Functions as a component of the nuclear pore complex (NPC).	0.789