dclre1c protein (Callorhinchus milii) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

dclre1c

Uncharacterized protein. (535 aa)

Predicted Functional Partners:

prkdc

0.992

xrcc6

0.989

lig4

0.989

xrcc5

0.981

poll

0.922

ENSCMIP00000037469

0.889

mre11

0.812

rad50

0.809

fancm

0.803

atm

0.803

Your Current Organism:

Callorhinchus milii

NCBI taxonomy Id: 7868
Other names: Australian ghost shark, C. milii, elephant fish, elephant shark, ghost shark, makorepe, plownose chimaera, reperepe

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSCMIP00000037469	atm	ENSCMIP00000037469	ENSCMIP00000019360	Uncharacterized protein.	Non-specific serine/threonine protein kinase.	0.705
ENSCMIP00000037469	dclre1c	ENSCMIP00000037469	ENSCMIP00000004995	Uncharacterized protein.	Uncharacterized protein.	0.889
ENSCMIP00000037469	lig4	ENSCMIP00000037469	ENSCMIP00000010015	Uncharacterized protein.	DNA ligase.	0.998
ENSCMIP00000037469	poll	ENSCMIP00000037469	ENSCMIP00000033643	Uncharacterized protein.	DNA polymerase; DNA polymerase that functions in several pathways of DNA repair. Involved in base excision repair (BER) responsible for repair of lesions that give rise to abasic (AP) sites in DNA. Also contributes to DNA double-strand break repair by non-homologous end joining and homologous recombination. Has both template-dependent and template- independent (terminal transferase) DNA polymerase activities. Has also a 5'-deoxyribose-5-phosphate lyase (dRP lyase) activity.	0.803
ENSCMIP00000037469	prkdc	ENSCMIP00000037469	ENSCMIP00000012639	Uncharacterized protein.	Uncharacterized protein; Belongs to the PI3/PI4-kinase family.	0.988
ENSCMIP00000037469	rad50	ENSCMIP00000037469	ENSCMIP00000043048	Uncharacterized protein.	Zinc-hook domain-containing protein.	0.561
ENSCMIP00000037469	xrcc5	ENSCMIP00000037469	ENSCMIP00000038307	Uncharacterized protein.	Ku domain-containing protein.	0.991
ENSCMIP00000037469	xrcc6	ENSCMIP00000037469	ENSCMIP00000009666	Uncharacterized protein.	Uncharacterized protein.	0.969
atm	ENSCMIP00000037469	ENSCMIP00000019360	ENSCMIP00000037469	Non-specific serine/threonine protein kinase.	Uncharacterized protein.	0.705
atm	dclre1c	ENSCMIP00000019360	ENSCMIP00000004995	Non-specific serine/threonine protein kinase.	Uncharacterized protein.	0.803
atm	fancm	ENSCMIP00000019360	ENSCMIP00000005855	Non-specific serine/threonine protein kinase.	Uncharacterized protein.	0.675
atm	lig4	ENSCMIP00000019360	ENSCMIP00000010015	Non-specific serine/threonine protein kinase.	DNA ligase.	0.834
atm	mre11	ENSCMIP00000019360	ENSCMIP00000030008	Non-specific serine/threonine protein kinase.	Double-strand break repair protein; Involved in DNA double-strand break repair (DSBR). Possesses single-strand endonuclease activity and double-strand-specific 3'-5' exonuclease activity. Also involved in meiotic DSB processing.	0.999
atm	prkdc	ENSCMIP00000019360	ENSCMIP00000012639	Non-specific serine/threonine protein kinase.	Uncharacterized protein; Belongs to the PI3/PI4-kinase family.	0.925
atm	rad50	ENSCMIP00000019360	ENSCMIP00000043048	Non-specific serine/threonine protein kinase.	Zinc-hook domain-containing protein.	0.999
atm	xrcc5	ENSCMIP00000019360	ENSCMIP00000038307	Non-specific serine/threonine protein kinase.	Ku domain-containing protein.	0.985
atm	xrcc6	ENSCMIP00000019360	ENSCMIP00000009666	Non-specific serine/threonine protein kinase.	Uncharacterized protein.	0.979
dclre1c	ENSCMIP00000037469	ENSCMIP00000004995	ENSCMIP00000037469	Uncharacterized protein.	Uncharacterized protein.	0.889
dclre1c	atm	ENSCMIP00000004995	ENSCMIP00000019360	Uncharacterized protein.	Non-specific serine/threonine protein kinase.	0.803
dclre1c	fancm	ENSCMIP00000004995	ENSCMIP00000005855	Uncharacterized protein.	Uncharacterized protein.	0.803