Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
p4ha1Prolyl 4-hydroxylase subunit alpha-1. (538 aa)    
Predicted Functional Partners:
p4ha3
Fe2OG dioxygenase domain-containing protein.
  
  
0.913
pycr1
Pyrroline-5-carboxylate reductase; Belongs to the pyrroline-5-carboxylate reductase family.
     
 0.906
p4ha2
Uncharacterized protein.
  
  
 
0.901
lap3
CYTOSOL_AP domain-containing protein.
     
  0.900
dao
DAO domain-containing protein.
     
 0.803
pdia2
Protein disulfide-isomerase.
   
 0.714
p4hb
Protein disulfide-isomerase.
   
 0.714
vamp7
Uncharacterized protein; Belongs to the synaptobrevin family.
      
 0.686
bet1
t-SNARE coiled-coil homology domain-containing protein.
      
 0.630
fip1l1
Fip1 domain-containing protein.
    
 
 0.586
Your Current Organism:
Callorhinchus milii
NCBI taxonomy Id: 7868
Other names: Australian ghost shark, C. milii, elephant fish, elephant shark, ghost shark, makorepe, plownose chimaera, reperepe
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