Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
guca1bUncharacterized protein. (196 aa)    
Predicted Functional Partners:
gucy2f
Guanylate cyclase.
   
 0.945
kif3a
Kinesin-like protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family.
    
 
 0.739
pde6h
Phosphodiesterase 6H.
   
  
 0.704
LOC103182500
Uncharacterized protein.
   
 
  0.695
LOC103190180
Guanylate cyclase activator 1A (Retina).
   
 
  0.695
ENSCMIP00000008489
Uncharacterized protein.
    
 
 0.675
rho
Rhodopsin.
   
 
 0.653
LOC103179120
Rhodopsin.
   
 
 0.653
cngb1
Cyclic nucleotide-binding domain-containing protein.
   
 0.652
cngb3
Ion_trans domain-containing protein.
   
 0.652
Your Current Organism:
Callorhinchus milii
NCBI taxonomy Id: 7868
Other names: Australian ghost shark, C. milii, elephant fish, elephant shark, ghost shark, makorepe, plownose chimaera, reperepe
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