xpo5 protein (Callorhinchus milii) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

xpo5

Importin N-terminal domain-containing protein. (1198 aa)

Predicted Functional Partners:

cse1l

0.981

drosha

0.972

dgcr8

0.970

rps2

0.969

xpot

0.968

xpo7

0.968

xpo6

0.967

xpo4

0.965

xpo1

0.961

ilf3

0.959

Your Current Organism:

Callorhinchus milii

NCBI taxonomy Id: 7868
Other names: Australian ghost shark, C. milii, elephant fish, elephant shark, ghost shark, makorepe, plownose chimaera, reperepe

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
cse1l	xpo1	ENSCMIP00000029281	ENSCMIP00000030135	Importin N-terminal domain-containing protein.	Exportin-1.	0.992
cse1l	xpo4	ENSCMIP00000029281	ENSCMIP00000011643	Importin N-terminal domain-containing protein.	Uncharacterized protein.	0.969
cse1l	xpo5	ENSCMIP00000029281	ENSCMIP00000005080	Importin N-terminal domain-containing protein.	Importin N-terminal domain-containing protein.	0.981
cse1l	xpo6	ENSCMIP00000029281	ENSCMIP00000018990	Importin N-terminal domain-containing protein.	Importin N-terminal domain-containing protein.	0.981
cse1l	xpo7	ENSCMIP00000029281	ENSCMIP00000029877	Importin N-terminal domain-containing protein.	Importin N-terminal domain-containing protein.	0.969
cse1l	xpot	ENSCMIP00000029281	ENSCMIP00000018664	Importin N-terminal domain-containing protein.	Exportin-T; tRNA nucleus export receptor which facilitates tRNA translocation across the nuclear pore complex. Belongs to the exportin family.	0.974
dgcr8	drosha	ENSCMIP00000031482	ENSCMIP00000035084	Uncharacterized protein.	Uncharacterized protein.	0.999
dgcr8	ilf3	ENSCMIP00000031482	ENSCMIP00000010829	Uncharacterized protein.	Uncharacterized protein.	0.613
dgcr8	xpo5	ENSCMIP00000031482	ENSCMIP00000005080	Uncharacterized protein.	Importin N-terminal domain-containing protein.	0.970
drosha	dgcr8	ENSCMIP00000035084	ENSCMIP00000031482	Uncharacterized protein.	Uncharacterized protein.	0.999
drosha	rps2	ENSCMIP00000035084	ENSCMIP00000042049	Uncharacterized protein.	S5 DRBM domain-containing protein; Belongs to the universal ribosomal protein uS5 family.	0.525
drosha	xpo1	ENSCMIP00000035084	ENSCMIP00000030135	Uncharacterized protein.	Exportin-1.	0.595
drosha	xpo5	ENSCMIP00000035084	ENSCMIP00000005080	Uncharacterized protein.	Importin N-terminal domain-containing protein.	0.972
ilf3	dgcr8	ENSCMIP00000010829	ENSCMIP00000031482	Uncharacterized protein.	Uncharacterized protein.	0.613
ilf3	rps2	ENSCMIP00000010829	ENSCMIP00000042049	Uncharacterized protein.	S5 DRBM domain-containing protein; Belongs to the universal ribosomal protein uS5 family.	0.667
ilf3	xpo5	ENSCMIP00000010829	ENSCMIP00000005080	Uncharacterized protein.	Importin N-terminal domain-containing protein.	0.959
rps2	drosha	ENSCMIP00000042049	ENSCMIP00000035084	S5 DRBM domain-containing protein; Belongs to the universal ribosomal protein uS5 family.	Uncharacterized protein.	0.525
rps2	ilf3	ENSCMIP00000042049	ENSCMIP00000010829	S5 DRBM domain-containing protein; Belongs to the universal ribosomal protein uS5 family.	Uncharacterized protein.	0.667
rps2	xpo5	ENSCMIP00000042049	ENSCMIP00000005080	S5 DRBM domain-containing protein; Belongs to the universal ribosomal protein uS5 family.	Importin N-terminal domain-containing protein.	0.969
xpo1	cse1l	ENSCMIP00000030135	ENSCMIP00000029281	Exportin-1.	Importin N-terminal domain-containing protein.	0.992