xpo5 protein (Callorhinchus milii) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

xpo5

Importin N-terminal domain-containing protein. (1198 aa)

Predicted Functional Partners:

ran

0.982

ENSCMIP00000004712

0.891

ranbp2

0.891

drosha

0.882

dgcr8

0.881

ENSCMIP00000020451

0.834

adgrd1

0.834

ENSCMIP00000038913

0.831

rangap1

0.769

xpot

0.718

Your Current Organism:

Callorhinchus milii

NCBI taxonomy Id: 7868
Other names: Australian ghost shark, C. milii, elephant fish, elephant shark, ghost shark, makorepe, plownose chimaera, reperepe

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSCMIP00000004712	ENSCMIP00000020451	ENSCMIP00000004712	ENSCMIP00000020451	RanBD1 domain-containing protein.	Uncharacterized protein.	0.978
ENSCMIP00000004712	ENSCMIP00000038913	ENSCMIP00000004712	ENSCMIP00000038913	RanBD1 domain-containing protein.	Nup214_FG domain-containing protein.	0.999
ENSCMIP00000004712	adgrd1	ENSCMIP00000004712	ENSCMIP00000035132	RanBD1 domain-containing protein.	Uncharacterized protein; Belongs to the G-protein coupled receptor 2 family.	0.978
ENSCMIP00000004712	ran	ENSCMIP00000004712	ENSCMIP00000035082	RanBD1 domain-containing protein.	GTP-binding nuclear protein Ran; GTP-binding protein involved in nucleocytoplasmic transport. Required for the import of protein into the nucleus and also for RNA export. Involved in chromatin condensation and control of cell cycle. Belongs to the small GTPase superfamily. Ran family.	0.978
ENSCMIP00000004712	ranbp2	ENSCMIP00000004712	ENSCMIP00000038177	RanBD1 domain-containing protein.	Uncharacterized protein.	0.475
ENSCMIP00000004712	rangap1	ENSCMIP00000004712	ENSCMIP00000010646	RanBD1 domain-containing protein.	RanGAP1_C domain-containing protein.	0.999
ENSCMIP00000004712	xpo5	ENSCMIP00000004712	ENSCMIP00000005080	RanBD1 domain-containing protein.	Importin N-terminal domain-containing protein.	0.891
ENSCMIP00000004712	xpot	ENSCMIP00000004712	ENSCMIP00000018664	RanBD1 domain-containing protein.	Exportin-T; tRNA nucleus export receptor which facilitates tRNA translocation across the nuclear pore complex. Belongs to the exportin family.	0.711
ENSCMIP00000020451	ENSCMIP00000004712	ENSCMIP00000020451	ENSCMIP00000004712	Uncharacterized protein.	RanBD1 domain-containing protein.	0.978
ENSCMIP00000020451	ENSCMIP00000038913	ENSCMIP00000020451	ENSCMIP00000038913	Uncharacterized protein.	Nup214_FG domain-containing protein.	0.785
ENSCMIP00000020451	ranbp2	ENSCMIP00000020451	ENSCMIP00000038177	Uncharacterized protein.	Uncharacterized protein.	0.982
ENSCMIP00000020451	rangap1	ENSCMIP00000020451	ENSCMIP00000010646	Uncharacterized protein.	RanGAP1_C domain-containing protein.	0.935
ENSCMIP00000020451	xpo5	ENSCMIP00000020451	ENSCMIP00000005080	Uncharacterized protein.	Importin N-terminal domain-containing protein.	0.834
ENSCMIP00000020451	xpot	ENSCMIP00000020451	ENSCMIP00000018664	Uncharacterized protein.	Exportin-T; tRNA nucleus export receptor which facilitates tRNA translocation across the nuclear pore complex. Belongs to the exportin family.	0.853
ENSCMIP00000038913	ENSCMIP00000004712	ENSCMIP00000038913	ENSCMIP00000004712	Nup214_FG domain-containing protein.	RanBD1 domain-containing protein.	0.999
ENSCMIP00000038913	ENSCMIP00000020451	ENSCMIP00000038913	ENSCMIP00000020451	Nup214_FG domain-containing protein.	Uncharacterized protein.	0.785
ENSCMIP00000038913	adgrd1	ENSCMIP00000038913	ENSCMIP00000035132	Nup214_FG domain-containing protein.	Uncharacterized protein; Belongs to the G-protein coupled receptor 2 family.	0.785
ENSCMIP00000038913	ran	ENSCMIP00000038913	ENSCMIP00000035082	Nup214_FG domain-containing protein.	GTP-binding nuclear protein Ran; GTP-binding protein involved in nucleocytoplasmic transport. Required for the import of protein into the nucleus and also for RNA export. Involved in chromatin condensation and control of cell cycle. Belongs to the small GTPase superfamily. Ran family.	0.785
ENSCMIP00000038913	ranbp2	ENSCMIP00000038913	ENSCMIP00000038177	Nup214_FG domain-containing protein.	Uncharacterized protein.	0.999
ENSCMIP00000038913	rangap1	ENSCMIP00000038913	ENSCMIP00000010646	Nup214_FG domain-containing protein.	RanGAP1_C domain-containing protein.	0.795