Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
kdm5aUncharacterized protein. (1832 aa)    
Predicted Functional Partners:
phf12
Uncharacterized protein.
    
 
 0.916
gatad1
GATA zinc finger domain-containing protein 1.
    
 
 0.910
rb1
Uncharacterized protein.
    
 
 0.898
morf4l1
MRG domain-containing protein.
    
 
 0.802
ATP6
ATP synthase subunit a.
  
 0.800
atp5f1d
ATP synthase subunit delta, mitochondrial-like protein.
  
 0.800
atp5f1a
ATP synthase subunit alpha; Produces ATP from ADP in the presence of a proton gradient across the membrane.
  
 0.800
atp5f1c
ATP synthase subunit gamma.
  
 0.800
atp5po
Uncharacterized protein.
  
 0.800
LOC103173215
Histone H3; Belongs to the histone H3 family.
   
 0.768
Your Current Organism:
Callorhinchus milii
NCBI taxonomy Id: 7868
Other names: Australian ghost shark, C. milii, elephant fish, elephant shark, ghost shark, makorepe, plownose chimaera, reperepe
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