Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
usp13Ubiquitin carboxyl-terminal hydrolase. (853 aa)    
Predicted Functional Partners:
rps27a
Ubiquitin-like domain-containing protein.
    
 0.990
uba52
Ribosomal protein L40-like isoform 1.
   
 0.977
Ubc
Ubiquitin-like domain-containing protein.
    
 0.975
becn1
Uncharacterized protein.
    
 0.947
eno1
Uncharacterized protein.
   
  
 0.914
usp10
Ubiquitin carboxyl-terminal hydrolase.
     
 0.902
ufd1
Ubiquitin fusion degradation protein 1-like protein.
    
 0.863
zfand4
Uncharacterized protein.
    
 0.838
usp7
Uncharacterized protein; Belongs to the peptidase C19 family.
   
 
 0.817
ENSCMIP00000004064
Ubiquitin-like domain-containing protein.
   
 
 0.800
Your Current Organism:
Callorhinchus milii
NCBI taxonomy Id: 7868
Other names: Australian ghost shark, C. milii, elephant fish, elephant shark, ghost shark, makorepe, plownose chimaera, reperepe
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