ENSCMIP00000005334 protein (Callorhinchus milii)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

ENSCMIP00000005334

Uncharacterized protein. (141 aa)

Predicted Functional Partners:

hnrnpk

0.904

LOC103186664

0.859

syncrip

0.749

hnrnpr

0.749

ncbp2

0.724

rbmx

0.724

LOC103172223

0.715

ptbp2

0.706

ptbp3

0.706

ptbp1

0.706

Your Current Organism:

Callorhinchus milii

NCBI taxonomy Id: 7868
Other names: Australian ghost shark, C. milii, elephant fish, elephant shark, ghost shark, makorepe, plownose chimaera, reperepe

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSCMIP00000005334	LOC103172223	ENSCMIP00000005334	ENSCMIP00000006950	Uncharacterized protein.	Serine/arginine-rich splicing factor 3.	0.715
ENSCMIP00000005334	LOC103186664	ENSCMIP00000005334	ENSCMIP00000031850	Uncharacterized protein.	RRM domain-containing protein.	0.859
ENSCMIP00000005334	hnrnpk	ENSCMIP00000005334	ENSCMIP00000032849	Uncharacterized protein.	Uncharacterized protein.	0.904
ENSCMIP00000005334	hnrnpr	ENSCMIP00000005334	ENSCMIP00000039268	Uncharacterized protein.	Uncharacterized protein.	0.749
ENSCMIP00000005334	ncbp2	ENSCMIP00000005334	ENSCMIP00000019578	Uncharacterized protein.	Nuclear cap-binding protein subunit 2; Component of the cap-binding complex (CBC), which binds co- transcriptionally to the 5' cap of pre-mRNAs and is involved in various processes such as pre-mRNA splicing, translation regulation, nonsense- mediated mRNA decay, RNA-mediated gene silencing (RNAi) by microRNAs (miRNAs) and mRNA export. The CBC complex is involved in mRNA export from the nucleus, leading to the recruitment of the mRNA export machinery to the 5' end of mRNA and to mRNA export in a 5' to 3' direction through the nuclear pore. The CBC complex is also involved in mediating U [...]	0.724
ENSCMIP00000005334	ptbp1	ENSCMIP00000005334	ENSCMIP00000043280	Uncharacterized protein.	Uncharacterized protein.	0.706
ENSCMIP00000005334	ptbp2	ENSCMIP00000005334	ENSCMIP00000010462	Uncharacterized protein.	Uncharacterized protein.	0.706
ENSCMIP00000005334	ptbp3	ENSCMIP00000005334	ENSCMIP00000021436	Uncharacterized protein.	Uncharacterized protein.	0.706
ENSCMIP00000005334	rbmx	ENSCMIP00000005334	ENSCMIP00000025395	Uncharacterized protein.	Heterogeneous nuclear ribonucleoprotein G-like protein.	0.724
ENSCMIP00000005334	syncrip	ENSCMIP00000005334	ENSCMIP00000028548	Uncharacterized protein.	Uncharacterized protein.	0.749
LOC103172223	ENSCMIP00000005334	ENSCMIP00000006950	ENSCMIP00000005334	Serine/arginine-rich splicing factor 3.	Uncharacterized protein.	0.715
LOC103172223	LOC103186664	ENSCMIP00000006950	ENSCMIP00000031850	Serine/arginine-rich splicing factor 3.	RRM domain-containing protein.	0.967
LOC103172223	hnrnpk	ENSCMIP00000006950	ENSCMIP00000032849	Serine/arginine-rich splicing factor 3.	Uncharacterized protein.	0.956
LOC103172223	hnrnpr	ENSCMIP00000006950	ENSCMIP00000039268	Serine/arginine-rich splicing factor 3.	Uncharacterized protein.	0.727
LOC103172223	ncbp2	ENSCMIP00000006950	ENSCMIP00000019578	Serine/arginine-rich splicing factor 3.	Nuclear cap-binding protein subunit 2; Component of the cap-binding complex (CBC), which binds co- transcriptionally to the 5' cap of pre-mRNAs and is involved in various processes such as pre-mRNA splicing, translation regulation, nonsense- mediated mRNA decay, RNA-mediated gene silencing (RNAi) by microRNAs (miRNAs) and mRNA export. The CBC complex is involved in mRNA export from the nucleus, leading to the recruitment of the mRNA export machinery to the 5' end of mRNA and to mRNA export in a 5' to 3' direction through the nuclear pore. The CBC complex is also involved in mediating U [...]	0.777
LOC103172223	ptbp1	ENSCMIP00000006950	ENSCMIP00000043280	Serine/arginine-rich splicing factor 3.	Uncharacterized protein.	0.706
LOC103172223	ptbp2	ENSCMIP00000006950	ENSCMIP00000010462	Serine/arginine-rich splicing factor 3.	Uncharacterized protein.	0.706
LOC103172223	ptbp3	ENSCMIP00000006950	ENSCMIP00000021436	Serine/arginine-rich splicing factor 3.	Uncharacterized protein.	0.706
LOC103172223	rbmx	ENSCMIP00000006950	ENSCMIP00000025395	Serine/arginine-rich splicing factor 3.	Heterogeneous nuclear ribonucleoprotein G-like protein.	0.782
LOC103172223	syncrip	ENSCMIP00000006950	ENSCMIP00000028548	Serine/arginine-rich splicing factor 3.	Uncharacterized protein.	0.727