STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
hspg2Uncharacterized protein. (3602 aa)    
Predicted Functional Partners:
dag1
Peptidase S72 domain-containing protein.
   
 0.910
tinagl1
Tubulointerstitial nephritis antigen-like protein; Belongs to the peptidase C1 family.
   
 
 0.888
nid2
Uncharacterized protein.
   
 0.874
nid1
Uncharacterized protein.
   
 0.874
musk
Uncharacterized protein.
    
 0.750
dcn
Decorin; May affect the rate of fibrils formation.
   
 
 0.690
ENSCMIP00000025979
Uncharacterized protein.
   
 0.668
fbln1
Fibulin-1; Incorporated into fibronectin-containing matrix fibers. May play a role in cell adhesion and migration along protein fibers within the extracellular matrix (ECM). Could be important for certain developmental processes and contribute to the supramolecular organization of ECM architecture, in particular to those of basement membranes.
   
 0.668
acan
Uncharacterized protein.
     
 0.657
sdc1
4.1m domain-containing protein.
     
 0.622
Your Current Organism:
Callorhinchus milii
NCBI taxonomy Id: 7868
Other names: Australian ghost shark, C. milii, elephant fish, elephant shark, ghost shark, makorepe, plownose chimaera, reperepe
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