aga protein (Callorhinchus milii) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

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[Homology]

Score

aga

Uncharacterized protein. (337 aa)

Predicted Functional Partners:

gba2

0.622

ENSCMIP00000004288

0.610

rsph6a

0.590

dnai1

0.586

dnai2

0.585

nsun5

0.584

galc

0.554

pcdh20

0.516

gnpnat1

0.516

naglu

0.508

Your Current Organism:

Callorhinchus milii

NCBI taxonomy Id: 7868
Other names: Australian ghost shark, C. milii, elephant fish, elephant shark, ghost shark, makorepe, plownose chimaera, reperepe

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSCMIP00000004288	aga	ENSCMIP00000004288	ENSCMIP00000005393	Uncharacterized protein.	Uncharacterized protein.	0.610
aga	ENSCMIP00000004288	ENSCMIP00000005393	ENSCMIP00000004288	Uncharacterized protein.	Uncharacterized protein.	0.610
aga	dnai1	ENSCMIP00000005393	ENSCMIP00000023725	Uncharacterized protein.	Dynein intermediate chain 1, axonemal.	0.586
aga	dnai2	ENSCMIP00000005393	ENSCMIP00000045728	Uncharacterized protein.	Uncharacterized protein.	0.585
aga	galc	ENSCMIP00000005393	ENSCMIP00000009201	Uncharacterized protein.	Glyco_hydro_59M domain-containing protein.	0.554
aga	gba2	ENSCMIP00000005393	ENSCMIP00000028109	Uncharacterized protein.	Non-lysosomal glucosylceramidase; Non-lysosomal glucosylceramidase that catalyzes the hydrolysis of glucosylceramide (GlcCer) to free glucose and ceramide.	0.622
aga	gnpnat1	ENSCMIP00000005393	ENSCMIP00000025090	Uncharacterized protein.	Glucosamine 6-phosphate N-acetyltransferase.	0.516
aga	naglu	ENSCMIP00000005393	ENSCMIP00000018716	Uncharacterized protein.	Uncharacterized protein.	0.508
aga	nsun5	ENSCMIP00000005393	ENSCMIP00000026892	Uncharacterized protein.	SAM_MT_RSMB_NOP domain-containing protein; Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family.	0.584
aga	pcdh20	ENSCMIP00000005393	ENSCMIP00000007598	Uncharacterized protein.	Uncharacterized protein.	0.516
aga	rsph6a	ENSCMIP00000005393	ENSCMIP00000045012	Uncharacterized protein.	Uncharacterized protein.	0.590
dnai1	aga	ENSCMIP00000023725	ENSCMIP00000005393	Dynein intermediate chain 1, axonemal.	Uncharacterized protein.	0.586
dnai1	dnai2	ENSCMIP00000023725	ENSCMIP00000045728	Dynein intermediate chain 1, axonemal.	Uncharacterized protein.	0.964
dnai1	rsph6a	ENSCMIP00000023725	ENSCMIP00000045012	Dynein intermediate chain 1, axonemal.	Uncharacterized protein.	0.959
dnai2	aga	ENSCMIP00000045728	ENSCMIP00000005393	Uncharacterized protein.	Uncharacterized protein.	0.585
dnai2	dnai1	ENSCMIP00000045728	ENSCMIP00000023725	Uncharacterized protein.	Dynein intermediate chain 1, axonemal.	0.964
dnai2	rsph6a	ENSCMIP00000045728	ENSCMIP00000045012	Uncharacterized protein.	Uncharacterized protein.	0.925
galc	aga	ENSCMIP00000009201	ENSCMIP00000005393	Glyco_hydro_59M domain-containing protein.	Uncharacterized protein.	0.554
galc	gba2	ENSCMIP00000009201	ENSCMIP00000028109	Glyco_hydro_59M domain-containing protein.	Non-lysosomal glucosylceramidase; Non-lysosomal glucosylceramidase that catalyzes the hydrolysis of glucosylceramide (GlcCer) to free glucose and ceramide.	0.965
galc	naglu	ENSCMIP00000009201	ENSCMIP00000018716	Glyco_hydro_59M domain-containing protein.	Uncharacterized protein.	0.647