ablim3 protein (Callorhinchus milii) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

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empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

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textmining

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experimentally determined

co-expression

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gene neighborhood

gene co-occurrence

gene fusions

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[Homology]

Score

ablim3

Uncharacterized protein. (647 aa)

Predicted Functional Partners:

dpysl2

0.687

LOC103175432

0.664

samd8

0.590

ENSCMIP00000017983

0.588

kctd3

0.588

add2

0.565

add1

0.565

add3

0.565

Arhgef39

0.543

srf

0.524

Your Current Organism:

Callorhinchus milii

NCBI taxonomy Id: 7868
Other names: Australian ghost shark, C. milii, elephant fish, elephant shark, ghost shark, makorepe, plownose chimaera, reperepe

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Arhgef39	ablim3	ENSCMIP00000027140	ENSCMIP00000005401	Uncharacterized protein.	Uncharacterized protein.	0.543
ENSCMIP00000017983	ablim3	ENSCMIP00000017983	ENSCMIP00000005401	Guanine nucleotide-binding protein subunit gamma; Guanine nucleotide-binding proteins (G proteins) are involved as a modulator or transducer in various transmembrane signaling systems. The beta and gamma chains are required for the GTPase activity, for replacement of GDP by GTP, and for G protein-effector interaction.	Uncharacterized protein.	0.588
LOC103175432	ablim3	ENSCMIP00000043122	ENSCMIP00000005401	Uncharacterized protein.	Uncharacterized protein.	0.664
ablim3	Arhgef39	ENSCMIP00000005401	ENSCMIP00000027140	Uncharacterized protein.	Uncharacterized protein.	0.543
ablim3	ENSCMIP00000017983	ENSCMIP00000005401	ENSCMIP00000017983	Uncharacterized protein.	Guanine nucleotide-binding protein subunit gamma; Guanine nucleotide-binding proteins (G proteins) are involved as a modulator or transducer in various transmembrane signaling systems. The beta and gamma chains are required for the GTPase activity, for replacement of GDP by GTP, and for G protein-effector interaction.	0.588
ablim3	LOC103175432	ENSCMIP00000005401	ENSCMIP00000043122	Uncharacterized protein.	Uncharacterized protein.	0.664
ablim3	add1	ENSCMIP00000005401	ENSCMIP00000038979	Uncharacterized protein.	Alpha-adducin.	0.565
ablim3	add2	ENSCMIP00000005401	ENSCMIP00000030382	Uncharacterized protein.	Aldolase_II domain-containing protein.	0.565
ablim3	add3	ENSCMIP00000005401	ENSCMIP00000046119	Uncharacterized protein.	Gamma-adducin.	0.565
ablim3	dpysl2	ENSCMIP00000005401	ENSCMIP00000007457	Uncharacterized protein.	Amidohydro-rel domain-containing protein.	0.687
ablim3	kctd3	ENSCMIP00000005401	ENSCMIP00000042653	Uncharacterized protein.	BTB/POZ domain-containing protein KCTD3.	0.588
ablim3	samd8	ENSCMIP00000005401	ENSCMIP00000020269	Uncharacterized protein.	SAM domain-containing protein.	0.590
ablim3	srf	ENSCMIP00000005401	ENSCMIP00000043442	Uncharacterized protein.	MADS-box domain-containing protein.	0.524
add1	ablim3	ENSCMIP00000038979	ENSCMIP00000005401	Alpha-adducin.	Uncharacterized protein.	0.565
add2	ablim3	ENSCMIP00000030382	ENSCMIP00000005401	Aldolase_II domain-containing protein.	Uncharacterized protein.	0.565
add3	ablim3	ENSCMIP00000046119	ENSCMIP00000005401	Gamma-adducin.	Uncharacterized protein.	0.565
dpysl2	ablim3	ENSCMIP00000007457	ENSCMIP00000005401	Amidohydro-rel domain-containing protein.	Uncharacterized protein.	0.687
kctd3	ablim3	ENSCMIP00000042653	ENSCMIP00000005401	BTB/POZ domain-containing protein KCTD3.	Uncharacterized protein.	0.588
samd8	ablim3	ENSCMIP00000020269	ENSCMIP00000005401	SAM domain-containing protein.	Uncharacterized protein.	0.590
srf	ablim3	ENSCMIP00000043442	ENSCMIP00000005401	MADS-box domain-containing protein.	Uncharacterized protein.	0.524