Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
ENSCMIP00000005416Helicase ATP-binding domain-containing protein. (117 aa)    
Predicted Functional Partners:
LOC103173002
Uncharacterized protein.
 
     0.705
rxylt1
Uncharacterized protein.
   
  
 0.695
Rps11
Ribosomal_S17_N domain-containing protein; Belongs to the universal ribosomal protein uS17 family.
   
 0.689
pus7l
TRUD domain-containing protein.
   
 
 0.677
srp72
Signal recognition particle subunit SRP72; Signal-recognition-particle assembly has a crucial role in targeting secretory proteins to the rough endoplasmic reticulum membrane; Belongs to the SRP72 family.
   
 
 0.660
srgap1
Uncharacterized protein.
   
  
 0.604
srgap2
Uncharacterized protein.
   
  
 0.604
srgap3
Uncharacterized protein.
   
  
 0.604
LOC103184192
Uncharacterized protein.
  
 
 
 0.597
ddx20
Uncharacterized protein.
  
   
 0.535
Your Current Organism:
Callorhinchus milii
NCBI taxonomy Id: 7868
Other names: Australian ghost shark, C. milii, elephant fish, elephant shark, ghost shark, makorepe, plownose chimaera, reperepe
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