Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
npm2Nucleoplasmin domain-containing protein. (218 aa)    
Predicted Functional Partners:
ncl
Uncharacterized protein.
   
 
 0.933
rpl4
Ribos_L4_asso_C domain-containing protein.
   
 
 0.901
rpl23a
60S ribosomal protein L23a-like protein; Belongs to the universal ribosomal protein uL23 family.
   
   0.881
rpl6
60S ribosomal protein L6; Belongs to the eukaryotic ribosomal protein eL6 family.
   
 
 0.869
Rps6
40S ribosomal protein S6; Belongs to the eukaryotic ribosomal protein eS6 family.
   
 
 0.866
Rpl19
Ribosomal protein L19; Belongs to the eukaryotic ribosomal protein eL19 family.
   
   0.839
rpl35
Uncharacterized protein.
   
   0.836
rpl7a
Ribosomal_L7Ae domain-containing protein.
   
   0.834
surf6
SURF6 domain-containing protein.
   
 
 0.828
LOC103171726
Ribosomal_L18_c domain-containing protein.
   
 
 0.824
Your Current Organism:
Callorhinchus milii
NCBI taxonomy Id: 7868
Other names: Australian ghost shark, C. milii, elephant fish, elephant shark, ghost shark, makorepe, plownose chimaera, reperepe
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