Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
lrrc41Uncharacterized protein. (773 aa)    
Predicted Functional Partners:
drg1
OBG-type G domain-containing protein.
   
   0.895
asb13
Uncharacterized protein.
     
 0.735
cul5
CULLIN_2 domain-containing protein; Belongs to the cullin family.
    
 0.701
elob
Ubiquitin-like domain-containing protein.
    
 0.681
gemin8
Uncharacterized protein.
      
 0.679
suox
Cytochrome b5 heme-binding domain-containing protein.
      
 0.676
klhl42
BTB domain-containing protein.
     
 0.675
st6galnac6
Uncharacterized protein; Belongs to the glycosyltransferase 29 family.
      
 0.672
neurl2
Uncharacterized protein.
     
 0.650
commd4
COMM domain-containing protein 4-like protein.
     
  0.645
Your Current Organism:
Callorhinchus milii
NCBI taxonomy Id: 7868
Other names: Australian ghost shark, C. milii, elephant fish, elephant shark, ghost shark, makorepe, plownose chimaera, reperepe
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